Motif HL_89954.1 Version HL_89954.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1ZBH_001 | 1ZBH | 0.2863 | 3 | Mini UNCG | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW |
| 2 | HL_4QIL_001 | 4QIL | 0.0380 | 2 | D | RNA (19-mer) | C | 8 | G | 10 | G | 12 | cWW | |
| 3 | HL_4ZLD_001 | 4ZLD | 0.0000 | 2 | Mini UNCG | B | RNA (17-mer) | C | 7 | G | 9 | G | 11 | cWW |
| 4 | HL_4Z31_002 | 4Z31 | 0.0495 | 2 | F | RNA (15-mer) | C | 6 | G | 8 | G | 10 | cWW | |
| 5 | HL_4QI2_001 | 4QI2 | 0.0914 | 2 | E | RNA (23-mer) | C | 10 | G | 12 | G | 14 | cWW | |
| 6 | HL_4QOZ_001 | 4QOZ | 0.2535 | 3 | Mini UNCG | A | histone mRNA stem-loop | U | 11 | U | 14 | A | 16 | cWW |
| 7 | HL_4TUX_001 | 4TUX | 0.3417 | 3 | C | RNA (26-MER) | U | 13 | U | 16 | A | 18 | cWW | |
| 8 | HL_4V91_004 | 4V91 | 0.5361 | 2 | 1 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW | |
| 9 | HL_4V88_117 | 4V88 | 0.7948 | 2 | A5 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW | |
| 10 | HL_4U26_103 | 4U26 | 0.8999 | 2 | Mini UNCG (H) | BB | 5S rRNA | G | 86 | C | 88 | C | 90 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUG | 4 |
| UUUUCA | 3 |
| CUUCG | 2 |
| GUCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGU | 4 |
| UUUC | 3 |
| UUC | 2 |
| UCU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Mini UNCG (3)
- Mini UNCG (H) (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.04 | Avg 0.44 | Max 1.01
Coloring options: