Motif HL_92706.1 Version HL_92706.1 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUX_007 | 4CUX | 0.7712 | 2 | 2 | 18S RRNA | C | 275 | C | 276 | U | 278 | G | 279 | G | 281 | cWW | ||
| 2 | HL_4CUV_018 | 4CUV | 0.0000 | 1 | 1 | 25S RRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW | |
| 3 | HL_3U5H_018 | 3U5H | 0.3292 | 1 | 5 | 25S rRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW | |
| 4 | HL_1P6V_001 | 1P6V | 0.8091 | 1 | UNCG variation | B | 45-MER | C | 26 | U | 27 | C | 29 | G | 30 | G | 31 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCUUC | 2 |
| CCUUGUG | 1 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCUU | 2 |
| CUUGU | 1 |
| UUCG | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_92706.1 | Only in the parent motif |
|---|---|---|---|
| HL_84258.1 Compare | HL_1P6V_001 | HL_4CUV_018, HL_3U5H_018, HL_4CUX_007 | HL_1S72_007, HL_4NVV_008 |
| HL_62967.1 Compare | HL_3U5H_018 | HL_4CUV_018, HL_1P6V_001, HL_4CUX_007 | HL_4A1B_024 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- UNCG variation (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.33 | Avg 0.55 | Max 0.86
Coloring options: