Motif HL_84258.1 Version HL_84258.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1P6V_001 | 1P6V | 0.8388 | 1 | UNCG variation | B | 45-MER | C | 26 | U | 27 | C | 29 | G | 30 | G | 31 | cWW | |
| 2 | HL_4NVV_008 | 4NVV | 0.0000 | 2 | A | 23S Ribosomal RNA | G | 269 | C | 270 | U | 272 | G | 273 | C | 275 | cWW | ||
| 3 | HL_1S72_007 | 1S72 | 0.5652 | 2 | 0 | LSU rRNA | C | 195 | G | 196 | A | 198 | A | 199 | G | 201 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUCGG | 1 |
| GCUUGUC | 1 |
| CGCAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCG | 1 |
| CUUGU | 1 |
| GCAAU | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_84258.1 | Only in the parent motif |
|---|---|---|---|
| HL_21675.3 Compare | HL_1S72_007 | HL_1P6V_001, HL_4NVV_008 | HL_4A1B_002 |
| HL_42077.2 Compare | HL_1P6V_001 | HL_1S72_007, HL_4NVV_008 | HL_1S72_019, HL_2QBG_020 |
Children motifs
| Child motif | Common motif instances | Only in HL_84258.1 | Only in the child motif |
|---|---|---|---|
| HL_19626.1 Compare | HL_4NVV_008 | HL_1S72_007, HL_1P6V_001 | HL_3U5H_002, HL_4CUV_002, HL_4A1B_002, HL_4CUX_004 |
| HL_92706.1 Compare | HL_1P6V_001 | HL_1S72_007, HL_4NVV_008 | HL_4CUV_018, HL_3U5H_018, HL_4CUX_007 |
| HL_62564.1 Compare | HL_1S72_007 | HL_1P6V_001, HL_4NVV_008 |
- Annotations
-
- (2)
- UNCG variation (1)
- Basepair signature
- cWW-R-R
- Heat map statistics
- Min 0.57 | Avg 0.50 | Max 0.85
Coloring options: