Motif HL_93212.2 Version HL_93212.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5T83_003 | 5T83 | 0.9223 | 1 | A | Guanidine-I riboswitch | G | 77 | A | 78 | U | 79 | A | 80 | A | 81 | A | 82 | A | 83 | C | 85 | cWW | ntWH | tWH | |
| 2 | HL_4V88_220 | 4V88 | 0.8491 | 1 | A6 | SSU rRNA | G | 1594 | U | 1595 | C | 1596 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW | ||
| 3 | HL_5TBW_037 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | |||
| 4 | HL_4V8P_119 | 4V8P | 0.1627 | 1 | D1 | LSU rRNA | G | 1704 | U | 1705 | U | 1706 | A | 1707 | U | 1708 | C | 1709 | U | 1710 | U | 1712 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUCUUU | 2 |
| GAUAAAAGC | 1 |
| GUCAUCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUCUU | 2 |
| AUAAAAG | 1 |
| UCAUCAG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.16 | Avg 0.60 | Max 0.98
Coloring options: