Motif HL_93692.1 Version HL_93692.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AJ0_021 | 5AJ0 | 0.6984 | 3 | A2 | LSU rRNA | G | 1461 | C | 1462 | C | 1465 | G | 1466 | C | 1468 | cWW | |
| 2 | HL_4LGT_002 | 4LGT | 0.0000 | 1 | F | stem-loop of 23S rRNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 3 | HL_3J9W_023 | 3J9W | 0.6685 | 1 | AA | SSU rRNA | C | 1038 | U | 1039 | C | 1041 | G | 1042 | G | 1043 | ncWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCGCGCC | 1 |
| CGUGAG | 1 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCGCGC | 1 |
| GUGA | 1 |
| UUCG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.67 | Avg 0.53 | Max 1.02
Coloring options: