HL_5AJ0_021

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|C|1463, 5AJ0|1|A2|G|1464, 5AJ0|1|A2|C|1467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93692.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

3

Unit IDs

5AJ0|1|A2|G|1461
5AJ0|1|A2|C|1462
5AJ0|1|A2|C|1463
5AJ0|1|A2|G|1464
5AJ0|1|A2|C|1465
5AJ0|1|A2|G|1466
5AJ0|1|A2|C|1467
5AJ0|1|A2|C|1468

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain Aa

60S ribosomal protein L27a

Chain Ai

60S ribosomal protein L36