Motif HL_94651.4 Version HL_94651.4 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | 3-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8VTW_018 | 8VTW | 0.2959 | 3 | 1A | LSU rRNA | C | 612 | G | 613 | A | 614|||C | G | 615 | cWW | ||
| 2 | HL_7A0S_019 | 7A0S | 0.0000 | 2 | X | LSU rRNA | U | 622 | G | 623 | A | 626 | A | 627 | cWW | ntsS | |
| 3 | HL_5F5F_001 | 5F5F | 0.3272 | 4 | B | RNA (20-mer) | C | 7 | G | 8 | A | 13 | G | 14 | cWW | tsS | |
| 4 | HL_5F5F_003 | 5F5F | 0.3259 | 4 | F | RNA (20-mer) | C | 7 | G | 8 | A | 13 | G | 14 | cWW | tsS | |
| 5 | HL_5F5H_001 | 5F5H | 0.6057 | 4 | C | RNA (21-mer) | C | 8 | G | 9 | A | 14 | G | 15 | cWW | tsS | |
| 6 | HL_5F5H_002 | 5F5H | 0.5932 | 4 | D | RNA (21-mer) | C | 8 | G | 9 | A | 14 | G | 15 | cWW | tsS | |
| 7 | HL_5KK5_001 | 5KK5 | 0.7381 | 2 | B | RNA (40-MER) | C | -11 | U | -10 | U | -8 | G | -6 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUUUAG | 2 |
| CGUUCUAG | 2 |
| CGUUGAG | 1 |
| UGAAAA | 1 |
| CUCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUUUA | 2 |
| GUUCUA | 2 |
| GUUGA | 1 |
| GAAA | 1 |
| UCUU | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: