Motif HL_94803.2 Version HL_94803.2 of this group appears in releases 3.82 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 1-2 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4Z0C_002 | 4Z0C | 1.1874 | 6 | C | DNA (5'-R(P*AP*CP*GP*GP*AP*AP*AP*GP*AP*CP*CP*CP*C)-3') | G | 4 | C | 11 | cWW | |
| 2 | HL_8C3A_209 | 8C3A | 0.9133 | 4 | CM | SSU rRNA | C | 762 | G | 767 | cWW | |
| 3 | HL_4WF9_037 | 4WF9 | 0.5868 | 2 | X | LSU rRNA | C | 1612 | G | 1615 | cWW | |
| 4 | HL_5TBW_022 | 5TBW | 0.6808 | 4 | 1 | LSU rRNA | C | 958 | G | 963 | cWW | |
| 5 | HL_6AAX_001 | 6AAX | 0.3522 | 4 | B | RNA (28-mer) | U | 933 | A | 938 | cWW | |
| 6 | HL_8J72_001 | 8J72 | 0.0000 | 3 | C | lncRNA Trincr1 | C | 4 | G | 8 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAGACC | 1 |
| CCUUUG | 1 |
| CGAG | 1 |
| CCUCAG | 1 |
| UGGAAA | 1 |
| CAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGAC | 1 |
| CUUU | 1 |
| GA | 1 |
| CUCA | 1 |
| GGAA | 1 |
| AAA | 1 |
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