Motif HL_96863.1 Version HL_96863.1 of this group appears in releases 3.22 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4PQV_002 | 4PQV | 0.0000 | 1 | Pseudoknot geometry | A | Flavivirus 3' UTR stem loop IV | C | 28 | G | 29 | C | 30 | C | 31 | G | 32 | G | 34 | cWW | |
| 2 | HL_4Y4O_168 | 4Y4O | 0.9152 | 0 | 2A | LSU rRNA | C | 2701 | U | 2702 | C | 2703 | C | 2704 | A | 2705 | G | 2706 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCCGAG | 1 |
| CUCCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCGA | 1 |
| UCCA | 1 |
- Annotations
-
- Pseudoknot geometry (1)
- (1)
- Basepair signature
- cWW-R-cSH-R
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
Coloring options: