Motif HL_96915.1 Version HL_96915.1 of this group appears in releases 0.3 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_059 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ncwW |
| 2 | HL_4A1B_058 | 4A1B | 0.3732 | 0 | 1 | 26S RRNA | U | 2713 | U | 2714 | C | 2715 | A | 2716 | G | 2717 | U | 2718 | A | 2719 | G | 2720 | G | 2721 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 1 |
| UUCAGUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 1 |
| UCAGUAG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_96915.1 | Only in the child motif |
|---|---|---|---|
| HL_96915.2 Compare | HL_3U5H_059, HL_4A1B_058 | HL_4CUV_059 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.37 | Avg 0.19 | Max 0.37
Coloring options: