Motif HL_96915.2 Version HL_96915.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUV_059 | 4CUV | 0.1189 | 0 | 1 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | |
| 2 | HL_3U5H_059 | 3U5H | 0.0000 | 0 | 5 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ncwW |
| 3 | HL_4A1B_058 | 4A1B | 0.3732 | 0 | 1 | LSU rRNA | U | 2713 | U | 2714 | C | 2715 | A | 2716 | G | 2717 | U | 2718 | A | 2719 | G | 2720 | G | 2721 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 2 |
| UUCAGUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 2 |
| UCAGUAG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_96915.2 | Only in the parent motif |
|---|---|---|---|
| HL_96915.1 Compare | HL_3U5H_059, HL_4A1B_058 | HL_4CUV_059 |
Children motifs
| Child motif | Common motif instances | Only in HL_96915.2 | Only in the child motif |
|---|---|---|---|
| HL_96915.3 Compare | HL_3U5H_059, HL_4A1B_058, HL_4CUV_059 | HL_1VX6_058 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.20 | Max 0.39
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