Motif HL_96915.4 Version HL_96915.4 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_058 | 4A1B | 0.3892 | 0 | 1 | 26S RRNA | U | 2713 | U | 2714 | C | 2715 | A | 2716 | G | 2717 | U | 2718 | A | 2719 | G | 2720 | G | 2721 | cWW | ncWW | |
| 2 | HL_3U5H_059 | 3U5H | 0.1189 | 0 | 5 | 25S rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ncwW | |
| 3 | HL_4CUV_059 | 4CUV | 0.0000 | 0 | 1 | 25S RRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ||
| 4 | HL_1VX6_058 | 1VX6 | 0.2586 | 0 | A | 28S ribosomal RNA | U | 3063 | U | 3064 | C | 3065 | A | 3066 | G | 3067 | A | 3068 | A | 3069 | C | 3070 | A | 3071 | cWW | ntWH | |
| 5 | HL_4W21_058 | 4W21 | 0.3878 | 0 | 5 | 28S ribosomal RNA | U | 4301 | U | 4302 | C | 4303 | A | 4304 | G | 4305 | U | 4306 | A | 4307 | C | 4308 | G | 4309 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 2 |
| UUCAGUAGG | 1 |
| UUCAGAACA | 1 |
| UUCAGUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 2 |
| UCAGUAG | 1 |
| UCAGAAC | 1 |
| UCAGUAC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_96915.4 | Only in the parent motif |
|---|---|---|---|
| HL_96915.3 Compare | HL_3U5H_059, HL_4A1B_058, HL_4CUV_059, HL_1VX6_058 | HL_4W21_058 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.29 | Max 0.53
Coloring options: