Motif HL_96915.3 Version HL_96915.3 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX6_058 | 1VX6 | 0.2637 | 0 | A | LSU rRNA | U | 3063 | U | 3064 | C | 3065 | A | 3066 | G | 3067 | A | 3068 | A | 3069 | C | 3070 | A | 3071 | cWW | ntWH | |
| 2 | HL_4CUV_059 | 4CUV | 0.1189 | 0 | 1 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ||
| 3 | HL_3U5H_059 | 3U5H | 0.0000 | 0 | 5 | LSU rRNA | U | 2724 | U | 2725 | C | 2726 | A | 2727 | G | 2728 | U | 2729 | G | 2730 | U | 2731 | G | 2732 | cWW | ncwW | |
| 4 | HL_4A1B_058 | 4A1B | 0.3732 | 0 | 1 | LSU rRNA | U | 2713 | U | 2714 | C | 2715 | A | 2716 | G | 2717 | U | 2718 | A | 2719 | G | 2720 | G | 2721 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGUGUG | 2 |
| UUCAGAACA | 1 |
| UUCAGUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUGU | 2 |
| UCAGAAC | 1 |
| UCAGUAG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_96915.3 | Only in the parent motif |
|---|---|---|---|
| HL_96915.2 Compare | HL_3U5H_059, HL_4A1B_058, HL_4CUV_059 | HL_1VX6_058 |
Children motifs
| Child motif | Common motif instances | Only in HL_96915.3 | Only in the child motif |
|---|---|---|---|
| HL_96915.4 Compare | HL_3U5H_059, HL_4A1B_058, HL_4CUV_059, HL_1VX6_058 | HL_4W21_058 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.23 | Max 0.43
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