#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 31-3
1 HL_2Y9H_0032Y9H0.29963FRNA (19-mer)C11G12G16cWW
2 HL_5TBW_0065TBW0.124921 LSU rRNAC208A209G212cWW
3 HL_4Y4O_1134Y4O0.000022A LSU rRNAC319A320G323cWW
4 HL_4WF9_0114WF90.14452X LSU rRNAC362A363G366cWW
5 HL_4IOA_0104IOA0.21272X LSU rRNAC330U331G334cWW
6 HL_4V9F_0114V9F0.248220 LSU rRNAG326A327C330cWW
7 HL_5J7L_1435J7L0.32202DA LSU rRNAG319A320C323cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAC2
CGCGUG1
CAUAG1
CAGAG1
CAAAG1
CUCAG1
Non-Watson-Crick part of the motif
SequenceCounts
AUA3
GCGU1
AGA1
AAA1
UCA1

Release history

Release3.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Basepair signature
    cWW
    Heat map statistics
    Min 0.12 | Avg 0.25 | Max 0.59
    Help

    Coloring options:

    HL_2Y9H_003:HL_2Y9H_003 = 0HL_2Y9H_003:HL_5TBW_006 = 0.2099HL_2Y9H_003:HL_4Y4O_113 = 0.2996HL_2Y9H_003:HL_4WF9_011 = 0.3623HL_2Y9H_003:HL_4IOA_010 = 0.4812HL_2Y9H_003:HL_4V9F_011 = 0.5054HL_2Y9H_003:HL_5J7L_143 = 0.5854HL_5TBW_006:HL_2Y9H_003 = 0.2099HL_5TBW_006:HL_5TBW_006 = 0HL_5TBW_006:HL_4Y4O_113 = 0.1249HL_5TBW_006:HL_4WF9_011 = 0.1933HL_5TBW_006:HL_4IOA_010 = 0.2986HL_5TBW_006:HL_4V9F_011 = 0.3314HL_5TBW_006:HL_5J7L_143 = 0.4131HL_4Y4O_113:HL_2Y9H_003 = 0.2996HL_4Y4O_113:HL_5TBW_006 = 0.1249HL_4Y4O_113:HL_4Y4O_113 = 0HL_4Y4O_113:HL_4WF9_011 = 0.1445HL_4Y4O_113:HL_4IOA_010 = 0.2127HL_4Y4O_113:HL_4V9F_011 = 0.2482HL_4Y4O_113:HL_5J7L_143 = 0.322HL_4WF9_011:HL_2Y9H_003 = 0.3623HL_4WF9_011:HL_5TBW_006 = 0.1933HL_4WF9_011:HL_4Y4O_113 = 0.1445HL_4WF9_011:HL_4WF9_011 = 0HL_4WF9_011:HL_4IOA_010 = 0.1885HL_4WF9_011:HL_4V9F_011 = 0.2465HL_4WF9_011:HL_5J7L_143 = 0.3124HL_4IOA_010:HL_2Y9H_003 = 0.4812HL_4IOA_010:HL_5TBW_006 = 0.2986HL_4IOA_010:HL_4Y4O_113 = 0.2127HL_4IOA_010:HL_4WF9_011 = 0.1885HL_4IOA_010:HL_4IOA_010 = 0HL_4IOA_010:HL_4V9F_011 = 0.1719HL_4IOA_010:HL_5J7L_143 = 0.2178HL_4V9F_011:HL_2Y9H_003 = 0.5054HL_4V9F_011:HL_5TBW_006 = 0.3314HL_4V9F_011:HL_4Y4O_113 = 0.2482HL_4V9F_011:HL_4WF9_011 = 0.2465HL_4V9F_011:HL_4IOA_010 = 0.1719HL_4V9F_011:HL_4V9F_011 = 0HL_4V9F_011:HL_5J7L_143 = 0.1549HL_5J7L_143:HL_2Y9H_003 = 0.5854HL_5J7L_143:HL_5TBW_006 = 0.4131HL_5J7L_143:HL_4Y4O_113 = 0.322HL_5J7L_143:HL_4WF9_011 = 0.3124HL_5J7L_143:HL_4IOA_010 = 0.2178HL_5J7L_143:HL_4V9F_011 = 0.1549HL_5J7L_143:HL_5J7L_143 = 0HL_2Y9H_003HL_5TBW_006HL_4Y4O_113HL_4WF9_011HL_4IOA_010HL_4V9F_011HL_5J7L_143Discrepancy0.000.100.200.300.400.50
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