Motif HL_98833.4 Version HL_98833.4 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1H4S_001 | 1H4S | 0.2444 | 3 | T | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | C | 17|||A | A | 21 | G | 22 | cWW | ||
| 2 | HL_1J1U_004 | 1J1U | 0.0000 | 3 | B | tRNA(Tyr) | C | 513||||4_556 | A | 514||||4_556 | G | 515||||4_556 | C | 516||||4_556 | C | 517||||4_556 | U | 518||||4_556 | A | 522||||4_556 | G | 523||||4_556 | cWW | ncWS | |
| 3 | HL_1J1U_001 | 1J1U | 0.0000 | 3 | tRNA D-loop | B | tRNA(Tyr) | C | 513 | A | 514 | G | 515 | C | 516 | C | 517 | U | 518 | A | 522 | G | 523 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 2 |
| CAGCCCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 2 |
| AGCCCGGUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- tRNA D-loop (1)
- Basepair signature
- cWW-cWS-R-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.11 | Max 0.24
Coloring options: