Motif HL_98995.2 Version HL_98995.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4IOA_036 | 4IOA | 0.7498 | 1 | X | LSU rRNA | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | cWW | |
| 2 | HL_1U6B_002 | 1U6B | 0.5667 | 0 | B | 197-MER | C | 70 | G | 71 | C | 72 | C | 73 | C | 74 | G | 75 | cWW | |
| 3 | HL_4PQV_002 | 4PQV | 0.3961 | 1 | A | Flavivirus 3' UTR stem loop IV | C | 28 | G | 29 | C | 30 | C | 31 | G | 32 | G | 34 | cWW | |
| 4 | HL_4IOA_064 | 4IOA | 0.2197 | 0 | X | LSU rRNA | U | 2680 | A | 2681 | C | 2682 | C | 2683 | A | 2684 | A | 2685 | cWW | |
| 5 | HL_5J7L_198 | 5J7L | 0.2534 | 0 | Ribsomal LSU H95 | DA | LSU rRNA | U | 2701 | G | 2702 | C | 2703 | C | 2704 | A | 2705 | A | 2706 | cWW |
| 6 | HL_4WF9_061 | 4WF9 | 0.2145 | 0 | Ribsomal LSU H95 | X | LSU rRNA | U | 2728 | G | 2729 | C | 2730 | C | 2731 | A | 2732 | A | 2733 | cWW |
| 7 | HL_4V8P_149 | 4V8P | 0.0000 | 0 | D1 | LSU rRNA | U | 3057 | G | 3058 | A | 3059 | A | 3060 | A | 3061 | A | 3062 | cWW | |
| 8 | HL_5TBW_066 | 5TBW | 0.1696 | 0 | Ribsomal LSU H95 | 1 | LSU rRNA | U | 3068 | G | 3069 | A | 3070 | U | 3071 | C | 3072 | A | 3073 | cWW |
| 9 | HL_4V9F_067 | 4V9F | 0.2032 | 0 | Ribsomal LSU H95 | 0 | LSU rRNA | C | 2737 | G | 2738 | A | 2739 | G | 2740 | A | 2741 | G | 2742 | cWW |
| 10 | HL_2NR0_003 | 2NR0 | 0.5900 | 0 | E | leucyl tRNA | C | 45|||D | A | 45|||E | A | 45|||F | U | 45|||G | A | 45|||H | G | 46|||I | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCCAA | 2 |
| GAAAAUC | 1 |
| CGCCCG | 1 |
| CGCCGAG | 1 |
| UACCAA | 1 |
| UGAAAA | 1 |
| UGAUCA | 1 |
| CGAGAG | 1 |
| CAAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCCA | 2 |
| AAAAU | 1 |
| GCCC | 1 |
| GCCGA | 1 |
| ACCA | 1 |
| GAAA | 1 |
| GAUC | 1 |
| GAGA | 1 |
| AAUA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Ribsomal LSU H95 (4)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.44 | Max 0.84
Coloring options: