Motif HL_99402.5 Version HL_99402.5 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7RQB_001 | 7RQB | 0.2375 | 0 | Pseudoknot with intercalation (H) | 1A | LSU rRNA | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | |
| 2 | HL_4V9F_001 | 4V9F | 0.1935 | 0 | Pseudoknot with intercalation | 0 | LSU rRNA | U | 55 | G | 56 | C | 57 | C | 58 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | cSH | |
| 3 | HL_7A0S_001 | 7A0S | 0.0000 | 0 | Pseudoknot with intercalation | X | LSU rRNA | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | |
| 4 | HL_2XDB_001 | 2XDB | 0.7525 | 0 | Pseudoknot with intercalation | G | TOXI | U | 4 | G | 5 | A | 6 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGCUACCUG | 1 |
| UGCCAAGCUG | 1 |
| CGAUUACCUG | 1 |
| UGAUUUGCUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCUACCU | 1 |
| GCCAAGCU | 1 |
| GAUUACCU | 1 |
| GAUUUGCU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot with intercalation (3)
- Pseudoknot with intercalation (H) (1)
- Basepair signature
- cWW-R-R-cSH-cSH-R-R
- Heat map statistics
- Min 0.19 | Avg 0.37 | Max 0.78
Coloring options: