Motif IL_00520.1 Version IL_00520.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-8 | 2-9 | 3-8 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_080 | 1VX2 | 0.4974 | 0 | 2 | 18S ribosomal RNA | C | 1742 | G | 1743 | G | 1744 | A | 1745 | U | 1746 | * | A | 1788 | G | 1789 | A | 1790 | A | 1791 | G | 1792 | ntSH | ntWS | cWW | |||||
| 2 | IL_4QCN_031 | 4QCN | 0.0000 | 0 | A | 23S Ribosomal RNA | G | 922 | C | 923 | U | 924 | A | 925 | G | 926 | * | C | 944 | A | 945 | A | 946 | A | 947 | C | 948 | cWW | cWW | tSH | |||||
| 3 | IL_4QCN_032 | 4QCN | 0.6796 | 1 | A | 23S Ribosomal RNA | C | 939 | C | 940 | U | 941 | C | 943 | C | 944 | * | G | 926 | G | 927 | G | 928 | G | 929 | G | 930 | cWW | ncSW | ||||||
| 4 | IL_1VX2_013 | 1VX2 | 0.9407 | 0 | 2 | 18S ribosomal RNA | C | 162 | U | 163 | A | 164 | G | 165 | A | 166 | * | U | 152 | G | 153 | U | 154 | G | 155 | G | 156 | ncSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAU*AGAAG | 1 |
| GCUAG*CAAAC | 1 |
| CCUACC*GGGGG | 1 |
| UGUGG*CUAGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGA*GAA | 1 |
| CUA*AAA | 1 |
| CUAC*GGG | 1 |
| GUG*UAG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_00520.1 | Only in the child motif |
|---|---|---|---|
| IL_99840.1 Compare | IL_4QCN_032, IL_4QCN_031 | IL_1VX2_013, IL_1VX2_080 | IL_4BPP_028, IL_4W23_079, IL_4CUV_046 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-R-R-L-L-cWW
- Heat map statistics
- Min 0.50 | Avg 0.60 | Max 0.94
Coloring options: