Motif IL_99840.1 Version IL_99840.1 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10	1-9	1-10	2-9	3-4	3-7	3-8	3-9	4-7	5-6
1	IL_4QCN_031	4QCN	0.6209	0	A	LSU rRNA	G	922	C	923	U	924	A	925	G	926	*	C	944	A	945	A	946	A	947	C	948		cWW	cWW			tSH
2	IL_4BPP_028	4BPP	0.5543	0	A	SSU rRNA	G	509	A	510	A	511	C	512	A	513	*	U	525	U	526	A	527	G	528	C	529		cWW			cWW	tSH		ntHS	cWW
3	IL_4W23_079	4W23	0.0000	0	2	SSU rRNA	G	1727	U	1728	U	1729	U	1730	A	1731	*	U	1803	U	1804	G	1805	A	1806	C	1807	ncWW	ncWW		ncSH					cWW
4	IL_4CUV_046	4CUV	0.3802	0	1	LSU rRNA	G	1005	A	1006	U	1007	U	1008	A	1009	*	U	1041	U	1042	C	1043	U	1044	C	1045		cWW	cWW			ncSW		cWw	cWW
5	IL_4QCN_032	4QCN	0.5025	1	A	LSU rRNA	C	939	C	940	U	941	C	943	C	944	*	G	926	G	927	G	928	G	929	G	930		cWW					ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCUAG*CAAAC	1
GAACA*UUAGC	1
GUUUA*UUGAC	1
GAUUA*UUCUC	1
CCUACC*GGGGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUA*AAA	1
AAC*UAG	1
UUU*UGA	1
AUU*UCU	1
CUAC*GGG	1

Release history

Release	1.18
Date	2014-10-07
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_99840.1	Only in the parent motif
IL_00520.1 Compare	IL_4QCN_032, IL_4QCN_031	IL_4BPP_028, IL_4W23_079, IL_4CUV_046	IL_1VX2_013, IL_1VX2_080
IL_00519.1 Compare	IL_4CUV_046	IL_4BPP_028, IL_4QCN_032, IL_4W23_079, IL_4QCN_031
IL_81965.1 Compare	IL_4BPP_028	IL_4QCN_032, IL_4W23_079, IL_4CUV_046, IL_4QCN_031	IL_1VX6_113, IL_4QCN_092, IL_1S72_083, IL_4A1B_110, IL_4IOA_070, IL_1VX2_035, IL_2QWY_001, IL_2QBG_024, IL_1S72_028, IL_4CUX_006, IL_1S72_021, IL_1VX6_038, IL_4QCN_021, IL_3J7A_061, IL_3IWN_002, IL_4CUX_047, IL_2A64_005, IL_1VW3_083, IL_2A64_006, IL_4BPP_090, IL_2QBG_068, IL_4CUV_116, IL_1U6B_002, IL_2QBG_094, IL_3J7A_080, IL_4CUV_073, IL_3U5F_091, IL_4IOA_089, IL_4FAW_002, IL_3U5H_112, IL_3U5H_032, IL_3UCZ_001, IL_4A1B_125, IL_3U5H_075, IL_1VWW_092, IL_2AW7_058, IL_1VWW_098, IL_1VWW_077, IL_4QCN_071, IL_4QCN_015, IL_4CUX_077, IL_1VX6_072, IL_1VX2_078

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-L-R-tSH-L-R-cWW
Heat map statistics: Min 0.38 | Avg 0.45 | Max 0.69

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Coloring options: Nucleotide numbers

Motif IL_99840.1 Version IL_99840.1 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_99840.1 Version IL_99840.1 of this group appears in releases 1.18 to 1.18

Download

Csv

Json