Motif IL_00906.1 Version IL_00906.1 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_041 | 1FJG | 0.0000 | 3 | Isolated cWS basepair (H) | A | SSU rRNA | U | 1052 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | cWW |
2 | IL_2PXV_001 | 2PXV | 0.9295 | 4 | B | 4.5 S RNA | U | 139 | G | 144 | * | C | 167 | A | 168 | A | 169 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGCAU*AUG | 1 |
UACCAG*CAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCA*U | 1 |
ACCA*A | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_00906.1 | Only in the parent motif |
---|---|---|---|
IL_60928.1 Compare | IL_2PXV_001 | IL_1FJG_041 | |
IL_96203.1 Compare | IL_1FJG_041 | IL_2PXV_001 |
Children motifs
Child motif | Common motif instances | Only in IL_00906.1 | Only in the child motif |
---|---|---|---|
IL_13561.1 Compare | IL_2PXV_001 | IL_1FJG_041 | IL_2GIS_003 |
IL_98138.1 Compare | IL_1FJG_041 | IL_2PXV_001 |
- Annotations
-
- Isolated cWS basepair (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.93 | Avg 0.46 | Max 0.93
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