Internal Loop Motif Atlas Release 0.3

#	Motif	Core Nts	Instances
1	IL_90629.1 View exemplar Basepair signature: History status: Exact match Isolated non-canonical cWW pair (29) Isolated near basepair (3) Isolated cWH basepair (1) Decoding loop with one bulged A (1)	6	119
2	IL_43856.1 View exemplar Basepair signature: History status: New id, 2 parents Single bulged C (4) Single bulged A (4) Multiple bulged bases (3) Single bulged U (2) Single bulged G (1)	4	53
3	IL_79986.1 View exemplar Basepair signature: History status: New id, 2 parents Multiple bulged bases (4) Single bulged A (4) Major groove intercalation (3) Single bulged U (2) Single bulged G (1)	4	51
4	IL_40289.1 View exemplar Basepair signature: History status: New id, 2 parents Single bulged A (5) Single bulged U (4) Single bulged C (1)	4	51
5	IL_11363.1 View exemplar Basepair signature: History status: Exact match Decoding loop related (5) Stack and bulge (1) Single stack bend with SAM intercalation (1) Single stack bend (1)	5	31
6	IL_14877.2 View exemplar Basepair signature: History status: Updated, 1 parent Tandem non-canonical cWW pairs (12)	8	28
7	IL_45564.2 View exemplar Basepair signature: History status: Exact match Major groove platform (6)	5	24
8	IL_30798.2 View exemplar Basepair signature: History status: Updated, 1 parent Major groove platform; stack outside cWW (2)	6	13
9	IL_83385.1 View exemplar Basepair signature: History status: New id, 1 parent Minor groove platform (2)	5	13
10	IL_86058.1 View exemplar Basepair signature: History status: New id, 2 parents	5	12
11	IL_33923.2 View exemplar Basepair signature: History status: Exact match Major groove platform with extra cWW (1)	7	11
12	IL_29996.3 View exemplar Basepair signature: History status: Updated, 1 parent Tandem non-canonical cWW pairs (2) Decoding loop related (1) UAA/GAN related (1)	9	11
13	IL_17977.1 View exemplar Basepair signature: History status: Exact match Major groove minor groove platform; mini C-loop (4) Major groove intercalation (1) Minor groove platform, major groove intercalation (1)	6	11
14	IL_87158.1 View exemplar Basepair signature: History status: Exact match 8x7 Sarcin-Ricin; G-bulge (2)	15	11
15	IL_33742.1 View exemplar Basepair signature: History status: Exact match Vitamin B12 Aptamer (1) Isolated basepair with bulged bases (1)	8	10
16	IL_26410.1 View exemplar Basepair signature: History status: Exact match	13	9
17	IL_01643.2 View exemplar Basepair signature: History status: Updated, 1 parent Double sheared (2)	8	9
18	IL_43241.1 View exemplar Basepair signature: History status: New id, 1 parent	10	9
19	IL_36534.1 View exemplar Basepair signature: History status: Exact match	12	9
20	IL_21490.1 View exemplar Basepair signature: History status: New id, 1 parent tSH-tHW-tHS (1)	10	8
21	IL_63717.1 View exemplar Basepair signature: History status: Exact match	9	8
22	IL_58849.1 View exemplar Basepair signature: History status: > 2 parents Tandem non-canonical cWW pairs (1)	8	7
23	IL_62089.1 View exemplar Basepair signature: History status: Exact match	5	7
24	IL_92741.1 View exemplar Basepair signature: History status: Exact match tSH-tHW-tHS-cWW (2) Other IL (1)	12	7
25	IL_11167.1 View exemplar Basepair signature: History status: Exact match	14	7
26	IL_26097.2 View exemplar Basepair signature: History status: Exact match	11	7
27	IL_82367.2 View exemplar Basepair signature: History status: Updated, 2 parents	7	6
28	IL_29746.2 View exemplar Basepair signature: History status: Updated, 1 parent Isolated cWH basepair (3)	6	6
29	IL_63091.1 View exemplar Basepair signature: History status: New id, 2 parents Double sheared (1)	8	6
30	IL_98756.1 View exemplar Basepair signature: History status: Exact match Bacterial 5S Loop E (3)	18	6
31	IL_47950.3 View exemplar Basepair signature: History status: Updated, 1 parent	7	6
32	IL_58602.2 View exemplar Basepair signature: History status: Updated, 1 parent cWH basepair and non-canonical AC (2)	6	6
33	IL_65962.2 View exemplar Basepair signature: History status: Exact match Isolated tHS basepair with bulges (1)	6	5
34	IL_21059.1 View exemplar Basepair signature: History status: Exact match	6	5
35	IL_39526.1 View exemplar Basepair signature: 09_cWW------cWW History status: Exact match	9	5
36	IL_06484.1 View exemplar Basepair signature: History status: Exact match	10	4
37	IL_49609.1 View exemplar Basepair signature: History status: Exact match	10	4
38	IL_07672.1 View exemplar Basepair signature: History status: New id, 2 parents UAA/GAN related (2) tSH-tHW (1)	9	4
39	IL_42271.1 View exemplar Basepair signature: History status: New id, 2 parents	10	4
40	IL_53229.1 View exemplar Basepair signature: History status: New id, 2 parents	7	4
41	IL_39216.3 View exemplar Basepair signature: History status: Updated, 1 parent Major groove intercalation (2)	5	4
42	IL_82768.1 View exemplar Basepair signature: History status: Exact match Receptor of 11-nt loop-receptor motif (2)	9	4
43	IL_78938.1 View exemplar Basepair signature: History status: Exact match	8	4
44	IL_79318.1 View exemplar Basepair signature: History status: New id, 2 parents	10	4
45	IL_19669.1 View exemplar Basepair signature: History status: Exact match Kink-turn (2)	12	3
46	IL_87744.2 View exemplar Basepair signature: History status: Exact match	7	3
47	IL_11419.1 View exemplar Basepair signature: History status: Exact match	4	3
48	IL_19801.1 View exemplar Basepair signature: History status: Exact match	10	3
49	IL_41412.1 View exemplar Basepair signature: History status: Exact match	9	3
50	IL_76095.1 View exemplar Basepair signature: History status: Exact match	18	3
51	IL_53203.1 View exemplar Basepair signature: History status: Exact match	14	3
52	IL_76212.1 View exemplar Basepair signature: History status: New id, 2 parents Stack outside cWW (1)	5	3
53	IL_34635.2 View exemplar Basepair signature: History status: Updated, 2 parents	7	3
54	IL_61616.1 View exemplar Basepair signature: History status: Exact match Kink-turn from U4 (2)	10	3
55	IL_08960.1 View exemplar Basepair signature: History status: New id, 2 parents	10	3
56	IL_12437.1 View exemplar Basepair signature: History status: Exact match	6	3
57	IL_20796.2 View exemplar Basepair signature: History status: Exact match 180 degree turn (1)	5	3
58	IL_85104.1 View exemplar Basepair signature: History status: Exact match	11	3
59	IL_09233.1 View exemplar Basepair signature: History status: New id, 2 parents	7	3
60	IL_53918.2 View exemplar Basepair signature: History status: Updated, 2 parents	6	3
61	IL_82563.1 View exemplar Basepair signature: cWW-R-tWH-R-R-R-cWW History status: Exact match	10	3
62	IL_55113.1 View exemplar Basepair signature: History status: Exact match	5	3
63	IL_43956.2 View exemplar Basepair signature: History status: Updated, 2 parents	9	3
64	IL_71700.1 View exemplar Basepair signature: History status: Exact match Quadruple sheared (1)	12	3
65	IL_10326.1 View exemplar Basepair signature: History status: Exact match	11	3
66	IL_57785.2 View exemplar Basepair signature: History status: Updated, 2 parents	8	3
67	IL_78493.1 View exemplar Basepair signature: History status: Exact match	12	3
68	IL_97453.2 View exemplar Basepair signature: History status: Exact match Decoding loop related (1)	9	3
69	IL_99336.1 View exemplar Basepair signature: History status: Exact match	6	3
70	IL_64838.1 View exemplar Basepair signature: History status: Exact match	8	2
71	IL_74876.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: Exact match	10	2
72	IL_83664.1 View exemplar Basepair signature: History status: Exact match	18	2
73	IL_59557.1 View exemplar Basepair signature: History status: New id, 1 parent	7	2
74	IL_00906.1 View exemplar Basepair signature: History status: Exact match	5	2
75	IL_20048.1 View exemplar Basepair signature: History status: Exact match	8	2
76	IL_65768.1 View exemplar Basepair signature: History status: Exact match	14	2
77	IL_26781.1 View exemplar Basepair signature: History status: Exact match	13	2
78	IL_82266.1 View exemplar Basepair signature: History status: Exact match	8	2
79	IL_90628.1 View exemplar Basepair signature: History status: Exact match	7	2
80	IL_09020.1 View exemplar Basepair signature: History status: Exact match	16	2
81	IL_62527.1 View exemplar Basepair signature: History status: Exact match	10	2
82	IL_77567.1 View exemplar Basepair signature: History status: New id, 1 parent	10	2
83	IL_94744.1 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (1)	17	2
84	IL_15373.1 View exemplar Basepair signature: History status: New id, 2 parents	12	2
85	IL_62718.1 View exemplar Basepair signature: 11_cWW-tSH-tHW-tHH-cWW---cSH History status: Exact match	11	2
86	IL_03814.1 View exemplar Basepair signature: History status: Exact match	15	2
87	IL_09882.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (2)	12	2
88	IL_78483.1 View exemplar Basepair signature: History status: Exact match	11	2
89	IL_16360.1 View exemplar Basepair signature: History status: Exact match	12	2
90	IL_82854.1 View exemplar Basepair signature: History status: Exact match	14	2
91	IL_57870.1 View exemplar Basepair signature: 14_cWW-tSS,cWH-cWH-cWW--tWH--cSS History status: Exact match	15	2
92	IL_00171.1 View exemplar Basepair signature: History status: New id, 2 parents Isolated non-canonical cWW contact (1)	6	2
93	IL_06149.1 View exemplar Basepair signature: History status: Exact match	5	2
94	IL_73748.1 View exemplar Basepair signature: History status: Exact match	9	2
95	IL_00209.1 View exemplar Basepair signature: History status: Exact match	12	1
96	IL_41009.1 View exemplar Basepair signature: cWW-L-L-L-tSS-tHW-L-R-cWW History status: Exact match	11	1
97	IL_83485.1 View exemplar Basepair signature: History status: Exact match	13	1
98	IL_26241.1 View exemplar Basepair signature: cWW-tHW-tHS-cWW-cWW History status: Exact match	10	1
99	IL_00449.1 View exemplar Basepair signature: History status: New id, 1 parent	7	1
100	IL_65519.1 View exemplar Basepair signature: History status: Exact match	10	1
101	IL_06499.1 View exemplar Basepair signature: History status: Exact match	8	1
102	IL_50503.1 View exemplar Basepair signature: History status: Exact match	7	1
103	IL_87816.1 View exemplar Basepair signature: History status: Exact match	10	1
104	IL_12233.1 View exemplar Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW History status: Exact match	14	1
105	IL_81728.1 View exemplar Basepair signature: History status: Exact match	12	1
106	IL_41791.1 View exemplar Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW History status: Exact match	11	1
107	IL_84308.1 View exemplar Basepair signature: History status: Exact match	11	1
108	IL_90454.1 View exemplar Basepair signature: History status: Exact match Symmetric double minor groove platform (1)	9	1
109	IL_12278.1 View exemplar Basepair signature: History status: Exact match	9	1
110	IL_20775.1 View exemplar Basepair signature: cWW-R-tHS-cWW History status: Exact match	7	1
111	IL_84453.1 View exemplar Basepair signature: History status: Exact match	5	1
112	IL_26786.1 View exemplar Basepair signature: History status: Exact match	8	1
113	IL_76474.1 View exemplar Basepair signature: History status: Exact match	13	1
114	IL_35361.1 View exemplar Basepair signature: History status: Exact match	13	1
115	IL_02449.1 View exemplar Basepair signature: History status: Exact match	12	1
116	IL_67328.1 View exemplar Basepair signature: History status: Exact match	8	1
117	IL_28626.1 View exemplar Basepair signature: History status: Exact match	14	1
118	IL_53598.1 View exemplar Basepair signature: History status: Exact match	4	1
119	IL_76973.1 View exemplar Basepair signature: History status: Exact match	6	1
120	IL_14812.1 View exemplar Basepair signature: History status: Exact match	12	1
121	IL_35496.1 View exemplar Basepair signature: History status: Exact match	8	1
122	IL_62105.1 View exemplar Basepair signature: History status: Exact match	7	1
123	IL_82472.1 View exemplar Basepair signature: History status: Exact match	13	1
124	IL_02835.1 View exemplar Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	13	1
125	IL_21031.1 View exemplar Basepair signature: History status: Exact match	12	1
126	IL_43316.1 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: Exact match	10	1
127	IL_67805.1 View exemplar Basepair signature: History status: Exact match	8	1
128	IL_85679.1 View exemplar Basepair signature: History status: Exact match	13	1
129	IL_29499.1 View exemplar Basepair signature: History status: Exact match	9	1
130	IL_77549.1 View exemplar Basepair signature: History status: Exact match	12	1
131	IL_03110.1 View exemplar Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW History status: Exact match	13	1
132	IL_69395.1 View exemplar Basepair signature: History status: Exact match	10	1
133	IL_09333.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match	12	1
134	IL_21254.1 View exemplar Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW History status: Exact match	12	1
135	IL_70290.1 View exemplar Basepair signature: History status: New id, 1 parent	12	1
136	IL_86213.1 View exemplar Basepair signature: History status: Exact match	10	1
137	IL_56170.1 View exemplar Basepair signature: History status: Exact match	13	1
138	IL_95275.1 View exemplar Basepair signature: History status: Exact match	14	1
139	IL_39324.1 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW History status: Exact match	18	1
140	IL_04040.1 View exemplar Basepair signature: History status: Exact match	9	1
141	IL_86981.1 View exemplar Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW History status: Exact match	15	1
142	IL_83250.1 View exemplar Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW History status: Exact match	11	1
143	IL_05830.1 View exemplar Basepair signature: History status: Exact match	14	1
144	IL_22579.1 View exemplar Basepair signature: cWW-L-R-R-R-R-L-cWW History status: Exact match	10	1
145	IL_47295.1 View exemplar Basepair signature: History status: Exact match	11	1
146	IL_72861.1 View exemplar Basepair signature: History status: Exact match	7	1
147	IL_33041.1 View exemplar Basepair signature: History status: Exact match	7	1
148	IL_19417.1 View exemplar Basepair signature: History status: Exact match	8	1
149	IL_63952.1 View exemplar Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW History status: Exact match	13	1
150	IL_87637.1 View exemplar Basepair signature: History status: Exact match	14	1
151	IL_33600.1 View exemplar Basepair signature: History status: Exact match	8	1

Coloring options:
Nucleotide numbers

New id, 2 parents 14; Exact match 119; New id, 1 parent 7; Updated, 1 parent 8; Updated, 2 parents 5; > 2 parents 1;

Internal Loop Motif Atlas Release 0.3 Download CSV JSON annotations

Internal Loop Motif Atlas Release 0.3

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