Motif IL_01054.1 Version IL_01054.1 of this group appears in releases 0.7 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-6 | 1-8 | 2-5 | 2-7 | 3-4 | 6-7 | 6-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V2F_109 | 3V2F | 0.0000 | 0 | B | 5S Ribosomal RNA | C | 30 | C | 31 | C | 32 | * | G | 50 | G | 51 | A | 52 | A | 53 | G | 54 | ncBW | cWW | ncWW | ntSW | cWW | ncSs | ||
| 2 | IL_2AW7_021 | 2AW7 | 0.9455 | 1 | A | 16S ribosomal RNA | C | 440 | A | 441 | G | 442 | * | C | 492 | A | 493 | G | 494 | A | 496 | G | 497 | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCC*GGAAG | 1 |
| CAG*CAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*GAA | 1 |
| A*AGAA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_01054.1 | Only in the parent motif |
|---|---|---|---|
| IL_55167.1 Compare | IL_2AW7_021 | IL_3V2F_109 |
Children motifs
| Child motif | Common motif instances | Only in IL_01054.1 | Only in the child motif |
|---|---|---|---|
| IL_28003.1 Compare | IL_3V2F_109 | IL_2AW7_021 | IL_4K27_004, IL_3Q1Q_009 |
| IL_22909.1 Compare | IL_2AW7_021 | IL_3V2F_109 |
- Annotations
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.95 | Avg 0.47 | Max 0.95
Coloring options: