Motif IL_28003.1 Version IL_28003.1 of this group appears in releases 1.9 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 3-7 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4K27_004 | 4K27 | 0.2053 | 1 | Receptor of 11-nt loop-receptor motif | U | Myotonic Dystrophy Type 2 RNA | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | * | U | 34 | A | 35 | G | 37 | cWW | tWH | cSH | cWW | ||
| 2 | IL_3Q1Q_009 | 3Q1Q | 0.0000 | 1 | Receptor of 11-nt loop-receptor motif | C | TRNA (PHE) | C | 44 | U | 45 | A | 46 | A | 47 | G | 48 | * | U | 32 | A | 33 | G | 35 | cWW | tWH | cSH | cWW | ||
| 3 | IL_3V2F_109 | 3V2F | 0.8679 | 0 | B | 5S Ribosomal RNA | G | 50 | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 30 | C | 31 | C | 32 | cWW | ncWW | ncSS | ncWW | ntWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UAUG | 2 |
| CCC*GGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 2 |
| C*GAA | 1 |
Release history
| Release | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|
| Date | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_28003.1 | Only in the parent motif |
|---|---|---|---|
| IL_13682.1 Compare | IL_3Q1Q_009 | IL_4K27_004, IL_3V2F_109 | |
| IL_01054.1 Compare | IL_3V2F_109 | IL_4K27_004, IL_3Q1Q_009 | IL_2AW7_021 |
Children motifs
| Child motif | Common motif instances | Only in IL_28003.1 | Only in the child motif |
|---|---|---|---|
| IL_28003.2 Compare | IL_4K27_004, IL_3Q1Q_009 | IL_3V2F_109 |
- Annotations
-
- Receptor of 11-nt loop-receptor motif (2)
- Basepair signature
- cWW-tWH-cSH-cWW
- Heat map statistics
- Min 0.21 | Avg 0.44 | Max 0.91
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