IL_4Y1M_005

3D structure

PDB id

4Y1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

An Escherichia coli yybP-ykoY Mn riboswitch in the Mn2+-free state

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4Y1M|1|B|U|4
4Y1M|1|B|U|5
4Y1M|1|B|U|6
*
4Y1M|1|B|A|103
4Y1M|1|B|U|104
4Y1M|1|B|A|105

Current chains

Chain B

E. coli yybP-ykoY riboswitch

Nearby chains

Chain A

E. coli yybP-ykoY riboswitch