Motif IL_01772.1 Version IL_01772.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-4 | 1-6 | 2-3 | 2-4 | 2-5 | 3-5 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U9S_004 | 1U9S | 0.2104 | 0 | Major groove minor groove platform; mini C-loop | A | C | 133 | G | 134 | * | C | 164 | A | 165 | A | 166 | G | 167 | ncBW | cWW | cWW | cSH | |||
| 2 | IL_3Q1Q_005 | 3Q1Q | 0.0000 | 0 | B | C | 126 | G | 127 | * | C | 148 | A | 149 | A | 150 | G | 151 | cWW | cWW | ncWW | ncSH | ncSH | |||
| 3 | IL_1U9S_002 | 1U9S | 0.6228 | 1 | Major groove intercalation | A | C | 228 | C | 229 | * | G | 111 | A | 112 | A | 114 | G | 115 | cWW | cWW | |||||
| 4 | IL_3TZR_001 | 3TZR | 0.8503 | 3 | Major groove intercalation | B+A | G | 110 | C | 111 | * | G | 52 | A | 53 | A | 57 | C | 58 | cWW | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CAAG | 2 |
| CC*GAAAG | 1 |
| GC*GAACUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 2 |
| *AAA | 1 |
| *AACUA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (2)
- Major groove minor groove platform; mini C-loop (1)
- (1)
- Basepair signature
- cWW-cSH-cSH-cWW
- Heat map statistics
- Min 0.21 | Avg 0.47 | Max 0.91
Coloring options: