Motif IL_02094.1 Version IL_02094.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_087 | 4V9F | 0.4939 | 2 | Isolated non-canonical cWW with bulges | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
| 2 | IL_4V91_143 | 4V91 | 0.1382 | 3 | Isolated non-canonical cWW pair (H) | 1 | LSU rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW |
| 3 | IL_4V88_379 | 4V88 | 0.0000 | 3 | Isolated non-canonical cWW pair (H) | A5 | LSU rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW |
| 4 | IL_4V8P_431 | 4V8P | 0.1300 | 3 | F1 | LSU rRNA | G | 3286 | U | 3287 | A | 3288 | * | U | 3329 | U | 3330 | C | 3334 | cWW | cWw | cWW | |
| 5 | IL_5AJ0_178 | 5AJ0 | 0.3243 | 3 | Isolated non-canonical cWW pair (H) | A2 | LSU rRNA | G | 4958 | U | 4959 | U | 4960 | * | G | 5003 | U | 5004 | C | 5008 | cWW | cWw | cWW |
| 6 | IL_3J7P_145 | 3J7P | 0.3790 | 3 | 5 | LSU rRNA | G | 5000 | U | 5001 | U | 5002 | * | G | 5045 | U | 5046 | C | 5050 | ncWw | |||
| 7 | IL_5FDU_041 | 5FDU | 0.5709 | 1 | Isolated non-canonical cWW pair (H) | 1A | LSU rRNA | C | 1167 | G | 1168 | C | 1169 | * | G | 1077 | A | 1078 | G | 1080 | cWW | cWW | cWW |
| 8 | IL_5J7L_282 | 5J7L | 0.5828 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | C | 1121 | G | 1122 | C | 1123 | * | G | 1031 | A | 1032 | G | 1034 | cWW | cWW | cWW |
| 9 | IL_4IOA_037 | 4IOA | 0.5671 | 1 | Isolated non-canonical cWW pair (H) | X | LSU rRNA | C | 1132 | G | 1133 | C | 1134 | * | G | 1042 | A | 1043 | G | 1045 | cWW | cWW | cWW |
| 10 | IL_3J9W_105 | 3J9W | 0.6036 | 1 | Isolated non-canonical cWW pair (H) | BA | LSU rRNA | C | 1167 | G | 1168 | C | 1169 | * | G | 1077 | A | 1078 | G | 1080 | cWW | cWW | cWW |
| 11 | IL_4V8P_293 | 4V8P | 0.6179 | 1 | Isolated non-canonical cWW pair (H) | E2 | 5.8S rRNA | C | 67 | A | 68 | A | 69 | * | U | 94 | C | 95 | G | 97 | cWW | ncWW | cWW |
| 12 | IL_4V88_457 | 4V88 | 0.8289 | 2 | Isolated non-canonical cWW pair | A6 | SSU rRNA | U | 1369 | U | 1372 | C | 1373 | * | G | 1352 | U | 1353 | G | 1354 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GAUG | 4 |
| GUA*UUAAGC | 2 |
| GUU*GUCAGC | 2 |
| UUC*GUGAG | 1 |
| GUA*UUCAGC | 1 |
| CAA*UCAG | 1 |
| UUAUC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AU | 4 |
| U*UCAG | 3 |
| U*UAAG | 2 |
| U*UGA | 1 |
| A*CA | 1 |
| UAU*U | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (H) (7)
- (2)
- Isolated non-canonical cWW pair (2)
- Isolated non-canonical cWW with bulges (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.51 | Max 0.91
Coloring options: