RNA 3D Hub //

Motif IL_02094.1 Version IL_02094.1 of this group appears in releases 2.0 to 2.0

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_4V9F_0874V9F0.49392Isolated non-canonical cWW pair0 LSU rRNAU2545U2546C2547*G2609U2610G2613cWWcWwcWW
2 IL_4V91_1434V910.13823Isolated non-canonical cWW pair (H)1 LSU rRNAG3328U3329A3330*U3373U3374C3378cWWcWwcWW
3 IL_4V88_3794V880.00003Isolated non-canonical cWW pair (H)A5 LSU rRNAG3328U3329A3330*U3373U3374C3378cWWcWwcWW
4 IL_4V8P_4314V8P0.13003F1 LSU rRNAG3286U3287A3288*U3329U3330C3334cWWcWwcWW
5 IL_5AJ0_1785AJ00.32433Isolated non-canonical cWW pair (H)A2 LSU rRNAG4958U4959U4960*G5003U5004C5008cWWcWwcWW
6 IL_3J7P_1453J7P0.379035 LSU rRNAG5000U5001U5002*G5045U5046C5050ncWw
7 IL_5FDU_0415FDU0.57091Isolated non-canonical cWW pair (H)1A LSU rRNAC1167G1168C1169*G1077A1078G1080cWWcWWcWW
8 IL_5J7L_2825J7L0.58281Isolated non-canonical cWW pairDA LSU rRNAC1121G1122C1123*G1031A1032G1034cWWcWWcWW
9 IL_4IOA_0374IOA0.56711Isolated non-canonical cWW pair (H)X LSU rRNAC1132G1133C1134*G1042A1043G1045cWWcWWcWW
10 IL_3J9W_1053J9W0.60361Isolated non-canonical cWW pair (H)BA LSU rRNAC1167G1168C1169*G1077A1078G1080cWWcWWcWW
11 IL_4V8P_2934V8P0.61791Isolated non-canonical cWW pair (H)E2 5.8S rRNAC67A68A69*U94C95G97cWWncWWcWW
12 IL_4V88_4574V880.82892Isolated non-canonical cWW pairA6 SSU rRNAU1369U1372C1373*G1352U1353G1354cWWcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGC*GAUG4
GUA*UUAAGC2
GUU*GUCAGC2
UUC*GUGAG1
GUA*UUCAGC1
CAA*UCAG1
UUAUC*GUG1
Non-Watson-Crick part of the motif
SequenceCounts
G*AU4
U*UCAG3
U*UAAG2
U*UGA1
A*CA1
UAU*U1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (H) (7)
  • Isolated non-canonical cWW pair (3)
  • (2)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.51 | Max 0.91
    Help

    Coloring options:

    IL_4V9F_087:IL_4V9F_087 = 0IL_4V9F_087:IL_4V91_143 = 0.4943IL_4V9F_087:IL_4V88_379 = 0.4939IL_4V9F_087:IL_4V8P_431 = 0.4824IL_4V9F_087:IL_5AJ0_178 = 0.4647IL_4V9F_087:IL_3J7P_145 = 0.5086IL_4V9F_087:IL_5FDU_041 = 0.8207IL_4V9F_087:IL_5J7L_282 = 0.8533IL_4V9F_087:IL_4IOA_037 = 0.8135IL_4V9F_087:IL_3J9W_105 = 0.8377IL_4V9F_087:IL_4V8P_293 = 0.7085IL_4V9F_087:IL_4V88_457 = 0.7402IL_4V91_143:IL_4V9F_087 = 0.4943IL_4V91_143:IL_4V91_143 = 0IL_4V91_143:IL_4V88_379 = 0.1382IL_4V91_143:IL_4V8P_431 = 0.1853IL_4V91_143:IL_5AJ0_178 = 0.3678IL_4V91_143:IL_3J7P_145 = 0.4206IL_4V91_143:IL_5FDU_041 = 0.6293IL_4V91_143:IL_5J7L_282 = 0.6403IL_4V91_143:IL_4IOA_037 = 0.6143IL_4V91_143:IL_3J9W_105 = 0.6583IL_4V91_143:IL_4V8P_293 = 0.6362IL_4V91_143:IL_4V88_457 = 0.8726IL_4V88_379:IL_4V9F_087 = 0.4939IL_4V88_379:IL_4V91_143 = 0.1382IL_4V88_379:IL_4V88_379 = 0IL_4V88_379:IL_4V8P_431 = 0.13IL_4V88_379:IL_5AJ0_178 = 0.3243IL_4V88_379:IL_3J7P_145 = 0.379IL_4V88_379:IL_5FDU_041 = 0.5709IL_4V88_379:IL_5J7L_282 = 0.5828IL_4V88_379:IL_4IOA_037 = 0.5671IL_4V88_379:IL_3J9W_105 = 0.6036IL_4V88_379:IL_4V8P_293 = 0.6179IL_4V88_379:IL_4V88_457 = 0.8289IL_4V8P_431:IL_4V9F_087 = 0.4824IL_4V8P_431:IL_4V91_143 = 0.1853IL_4V8P_431:IL_4V88_379 = 0.13IL_4V8P_431:IL_4V8P_431 = 0IL_4V8P_431:IL_5AJ0_178 = 0.3046IL_4V8P_431:IL_3J7P_145 = 0.3514IL_4V8P_431:IL_5FDU_041 = 0.6273IL_4V8P_431:IL_5J7L_282 = 0.6393IL_4V8P_431:IL_4IOA_037 = 0.6283IL_4V8P_431:IL_3J9W_105 = 0.6544IL_4V8P_431:IL_4V8P_293 = 0.6881IL_4V8P_431:IL_4V88_457 = 0.8531IL_5AJ0_178:IL_4V9F_087 = 0.4647IL_5AJ0_178:IL_4V91_143 = 0.3678IL_5AJ0_178:IL_4V88_379 = 0.3243IL_5AJ0_178:IL_4V8P_431 = 0.3046IL_5AJ0_178:IL_5AJ0_178 = 0IL_5AJ0_178:IL_3J7P_145 = 0.2912IL_5AJ0_178:IL_5FDU_041 = 0.7291IL_5AJ0_178:IL_5J7L_282 = 0.7434IL_5AJ0_178:IL_4IOA_037 = 0.7303IL_5AJ0_178:IL_3J9W_105 = 0.7443IL_5AJ0_178:IL_4V8P_293 = 0.7312IL_5AJ0_178:IL_4V88_457 = 0.9142IL_3J7P_145:IL_4V9F_087 = 0.5086IL_3J7P_145:IL_4V91_143 = 0.4206IL_3J7P_145:IL_4V88_379 = 0.379IL_3J7P_145:IL_4V8P_431 = 0.3514IL_3J7P_145:IL_5AJ0_178 = 0.2912IL_3J7P_145:IL_3J7P_145 = 0IL_3J7P_145:IL_5FDU_041 = 0.6665IL_3J7P_145:IL_5J7L_282 = 0.6851IL_3J7P_145:IL_4IOA_037 = 0.677IL_3J7P_145:IL_3J9W_105 = 0.6974IL_3J7P_145:IL_4V8P_293 = 0.7127IL_3J7P_145:IL_4V88_457 = 0.8462IL_5FDU_041:IL_4V9F_087 = 0.8207IL_5FDU_041:IL_4V91_143 = 0.6293IL_5FDU_041:IL_4V88_379 = 0.5709IL_5FDU_041:IL_4V8P_431 = 0.6273IL_5FDU_041:IL_5AJ0_178 = 0.7291IL_5FDU_041:IL_3J7P_145 = 0.6665IL_5FDU_041:IL_5FDU_041 = 0IL_5FDU_041:IL_5J7L_282 = 0.0783IL_5FDU_041:IL_4IOA_037 = 0.1118IL_5FDU_041:IL_3J9W_105 = 0.1293IL_5FDU_041:IL_4V8P_293 = 0.4788IL_5FDU_041:IL_4V88_457 = 0.6727IL_5J7L_282:IL_4V9F_087 = 0.8533IL_5J7L_282:IL_4V91_143 = 0.6403IL_5J7L_282:IL_4V88_379 = 0.5828IL_5J7L_282:IL_4V8P_431 = 0.6393IL_5J7L_282:IL_5AJ0_178 = 0.7434IL_5J7L_282:IL_3J7P_145 = 0.6851IL_5J7L_282:IL_5FDU_041 = 0.0783IL_5J7L_282:IL_5J7L_282 = 0IL_5J7L_282:IL_4IOA_037 = 0.1063IL_5J7L_282:IL_3J9W_105 = 0.113IL_5J7L_282:IL_4V8P_293 = 0.4917IL_5J7L_282:IL_4V88_457 = 0.6894IL_4IOA_037:IL_4V9F_087 = 0.8135IL_4IOA_037:IL_4V91_143 = 0.6143IL_4IOA_037:IL_4V88_379 = 0.5671IL_4IOA_037:IL_4V8P_431 = 0.6283IL_4IOA_037:IL_5AJ0_178 = 0.7303IL_4IOA_037:IL_3J7P_145 = 0.677IL_4IOA_037:IL_5FDU_041 = 0.1118IL_4IOA_037:IL_5J7L_282 = 0.1063IL_4IOA_037:IL_4IOA_037 = 0IL_4IOA_037:IL_3J9W_105 = 0.1282IL_4IOA_037:IL_4V8P_293 = 0.4307IL_4IOA_037:IL_4V88_457 = 0.6729IL_3J9W_105:IL_4V9F_087 = 0.8377IL_3J9W_105:IL_4V91_143 = 0.6583IL_3J9W_105:IL_4V88_379 = 0.6036IL_3J9W_105:IL_4V8P_431 = 0.6544IL_3J9W_105:IL_5AJ0_178 = 0.7443IL_3J9W_105:IL_3J7P_145 = 0.6974IL_3J9W_105:IL_5FDU_041 = 0.1293IL_3J9W_105:IL_5J7L_282 = 0.113IL_3J9W_105:IL_4IOA_037 = 0.1282IL_3J9W_105:IL_3J9W_105 = 0IL_3J9W_105:IL_4V8P_293 = 0.4779IL_3J9W_105:IL_4V88_457 = 0.6701IL_4V8P_293:IL_4V9F_087 = 0.7085IL_4V8P_293:IL_4V91_143 = 0.6362IL_4V8P_293:IL_4V88_379 = 0.6179IL_4V8P_293:IL_4V8P_431 = 0.6881IL_4V8P_293:IL_5AJ0_178 = 0.7312IL_4V8P_293:IL_3J7P_145 = 0.7127IL_4V8P_293:IL_5FDU_041 = 0.4788IL_4V8P_293:IL_5J7L_282 = 0.4917IL_4V8P_293:IL_4IOA_037 = 0.4307IL_4V8P_293:IL_3J9W_105 = 0.4779IL_4V8P_293:IL_4V8P_293 = 0IL_4V8P_293:IL_4V88_457 = 0.7113IL_4V88_457:IL_4V9F_087 = 0.7402IL_4V88_457:IL_4V91_143 = 0.8726IL_4V88_457:IL_4V88_379 = 0.8289IL_4V88_457:IL_4V8P_431 = 0.8531IL_4V88_457:IL_5AJ0_178 = 0.9142IL_4V88_457:IL_3J7P_145 = 0.8462IL_4V88_457:IL_5FDU_041 = 0.6727IL_4V88_457:IL_5J7L_282 = 0.6894IL_4V88_457:IL_4IOA_037 = 0.6729IL_4V88_457:IL_3J9W_105 = 0.6701IL_4V88_457:IL_4V8P_293 = 0.7113IL_4V88_457:IL_4V88_457 = 0IL_4V9F_087IL_4V91_143IL_4V88_379IL_4V8P_431IL_5AJ0_178IL_3J7P_145IL_5FDU_041IL_5J7L_282IL_4IOA_037IL_3J9W_105IL_4V8P_293IL_4V88_457Discrepancy0.000.200.400.600.80
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