RNA 3D Hub //

Motif IL_02284.4 Version IL_02284.4 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-63-4
1 IL_7A0S_1007A0S0.25991Decoding loop relatedX LSU rRNAG2818G2819C2820*G2846G2847C2849cWWcWW
2 IL_4WF9_1074WF90.00001X LSU rRNAG2863A2864G2865*U2891G2892C2894cWWcWW
3 IL_5J7L_0655J7L0.34771AA SSU rRNAG1455A1456G1457*U1445A1446C1448cWWcWW
4 IL_3NDB_0063NDB0.61801M SRP RNAG152A153G154*U175A176C178cWWcWW
5 IL_4M6D_0134M6D0.65660HaptamerG26A27G28*C39A40C41cWWcWW
6 IL_4M4O_0044M4O0.70910BRNA (59-MER)G26A27G28*C39A40C41cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*UAAC2
GAG*CAC2
GGC*GGAC1
GAG*UGAC1
Non-Watson-Crick part of the motif
SequenceCounts
A*AA2
A*A2
G*GA1
A*GA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Decoding loop related (1)
    • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.14 | Avg 0.45 | Max 0.80
    Help

    Coloring options:

    IL_7A0S_100:IL_7A0S_100 = 0IL_7A0S_100:IL_4WF9_107 = 0.2599IL_7A0S_100:IL_5J7L_065 = 0.4599IL_7A0S_100:IL_3NDB_006 = 0.6466IL_7A0S_100:IL_4M6D_013 = 0.5643IL_7A0S_100:IL_4M4O_004 = 0.6177IL_4WF9_107:IL_7A0S_100 = 0.2599IL_4WF9_107:IL_4WF9_107 = 0IL_4WF9_107:IL_5J7L_065 = 0.3477IL_4WF9_107:IL_3NDB_006 = 0.618IL_4WF9_107:IL_4M6D_013 = 0.6566IL_4WF9_107:IL_4M4O_004 = 0.7091IL_5J7L_065:IL_7A0S_100 = 0.4599IL_5J7L_065:IL_4WF9_107 = 0.3477IL_5J7L_065:IL_5J7L_065 = 0IL_5J7L_065:IL_3NDB_006 = 0.4348IL_5J7L_065:IL_4M6D_013 = 0.7948IL_5J7L_065:IL_4M4O_004 = 0.8027IL_3NDB_006:IL_7A0S_100 = 0.6466IL_3NDB_006:IL_4WF9_107 = 0.618IL_3NDB_006:IL_5J7L_065 = 0.4348IL_3NDB_006:IL_3NDB_006 = 0IL_3NDB_006:IL_4M6D_013 = 0.5556IL_3NDB_006:IL_4M4O_004 = 0.57IL_4M6D_013:IL_7A0S_100 = 0.5643IL_4M6D_013:IL_4WF9_107 = 0.6566IL_4M6D_013:IL_5J7L_065 = 0.7948IL_4M6D_013:IL_3NDB_006 = 0.5556IL_4M6D_013:IL_4M6D_013 = 0IL_4M6D_013:IL_4M4O_004 = 0.1382IL_4M4O_004:IL_7A0S_100 = 0.6177IL_4M4O_004:IL_4WF9_107 = 0.7091IL_4M4O_004:IL_5J7L_065 = 0.8027IL_4M4O_004:IL_3NDB_006 = 0.57IL_4M4O_004:IL_4M6D_013 = 0.1382IL_4M4O_004:IL_4M4O_004 = 0IL_7A0S_100IL_4WF9_107IL_5J7L_065IL_3NDB_006IL_4M6D_013IL_4M4O_004Discrepancy0.000.200.400.600.80
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