Internal Loop Motif Atlas Release 3.78

#	Motif	Num Nts	Instances
1	IL_73775.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (222) Isolated cWH basepair (2) Self complementary (1) Other IL (1)	6	241
2	IL_37497.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged A (95) Major groove intercalation (6)	5	101
3	IL_83039.12 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged U (91) Major groove intercalation (3)	5	94
4	IL_51629.1 View exemplar Basepair signature: cWW-cHW-cWW History status: Exact match Isolated cWH basepair (39) Isolated non-canonical cWW pair (12) Decoding loop related (1) cWH basepair with bulged bases (1) Self complementary (1) Decoding loop with one bulged A (1) Other IL (1) Multiple bulged bases, near cWW (1) Isolated tWW contact (1)	6	65
5	IL_30621.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (42) Self complementary (1)	8	45
6	IL_16396.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (17) Major groove intercalation (12) Stack outside cWW (9)	4	39
7	IL_00225.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged G (33) Major groove intercalation (2) Stack outside cWW (1)	5	36
8	IL_61258.11 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged C (36)	5	36
9	IL_27635.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Major groove platform (34) Major groove platform; stack outside cWW (1)	5	36
10	IL_42622.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Minor groove platform (26) Minor groove platform related (2) Multiple bulged bases (1) Single bulged A (1)	5	30
11	IL_76488.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single stack bend (27) Not an internal loop (1) Single stack bend with bulge (1)	5	29
12	IL_56467.7 View exemplar Basepair signature: cWW-L-R-tSH-tHS-cWW History status: Exact match Triple sheared (28)	10	28
13	IL_82068.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (16) Isolated non-canonical cWW with bulges (3) Single bulged G, near cWW (1) Other IL (1)	6	28
14	IL_70923.1 View exemplar Basepair signature: cWW-L-L-tSH-tHS-tHS-cWW History status: Exact match Kink-turn (27)	12	27
15	IL_50694.1 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match Major groove platform; stack outside cWW (26)	6	26
16	IL_09705.8 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (25) Double sheared; A in syn (1)	8	26
17	IL_52767.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Isolated cWS basepair (10) Isolated near basepair (6) Isolated non-canonical cWW contact (3) Isolated non-canonical cWW pair (2) Self complementary (1) Single bulged G, near cWW (1) Intercalated cWW (1)	6	24
18	IL_29007.1 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Minor groove platform (13) Minor groove platform, major groove intercalation (5) Major groove intercalation (2) Not an internal loop (1) Major groove minor groove platform; mini C-loop (1)	5	22
19	IL_63596.5 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: Exact match C-loop (17)	7	17
20	IL_89002.1 View exemplar Basepair signature: cWW-L-R-L-tHS-cWW History status: Exact match UAA/GAN (15) UAA/GAN related (1) UAA/GAN variation (1)	9	17
21	IL_45067.1 View exemplar Basepair signature: cWW-L-L-R-tSH-R-tSS-L-cWW History status: Exact match Kink-turn (12) Kink-turn with non-sequential stacking (5)	12	17
22	IL_59677.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (9) Bulged stacked bases (6)	4	16
23	IL_63566.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Major groove intercalation (7) Multiple bulged bases (6)	4	15
24	IL_15066.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (14)	8	15
25	IL_71530.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (11) Bulged stacked bases (1)	4	14
26	IL_09061.5 View exemplar Basepair signature: cWW-cSH-cWS-cWW History status: Exact match Major groove minor groove platform; mini C-loop (13)	6	14
27	IL_39521.6 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW History status: Exact match tSH-tHW-tHS (14)	10	14
28	IL_04059.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: Exact match tSH-tHW (11) Other IL (1)	8	13
29	IL_04346.6 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (13)	15	13
30	IL_38958.6 View exemplar Basepair signature: cWW-tHS-cWW History status: Exact match Isolated tHS basepair with bulges (13)	6	13
31	IL_82842.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Intercalated tWH (6) Stack and bulge (2) Intercalated cWW (2) Decoding loop related (1) Not an internal loop (1) Other IL (1)	5	13
32	IL_92788.1 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: Exact match Major groove minor groove platform with extra cWW (8) Isolated basepair with bulged bases (3) Minor groove platform with extra cWW (1)	8	13
33	IL_64417.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Decoding loop related (12)	5	12
34	IL_05564.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Major groove platform with extra cWW (8)	7	11
35	IL_53448.1 View exemplar Basepair signature: cWW-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (11)	0	11
36	IL_45612.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match	8	10
37	IL_15861.6 View exemplar Basepair signature: cWW-L-L-L-cSH-L-cWW History status: Exact match SSU/LSU pseudoknot (10)	10	10
38	IL_81389.3 View exemplar Basepair signature: cWW-tSH-L-R-L-cWW History status: Exact match UAA/GAN variation (6) UAA/GAN related (2) UAA/GAN (2)	9	10
39	IL_58764.2 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match Minor groove platform related (3) Tandem non-canonical cWW pairs (2) Decoding loop related (1) UAA/GAN variation (1) Multiple bulged bases with non-canonical cWW (1)	9	10
40	IL_92001.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single stack bend (7) Single base bend (1) Other IL (1)	5	10
41	IL_71110.1 View exemplar Basepair signature: cWW-cWW-L-R-cWW History status: Exact match Tandem non-canonical cWW pairs (8) Other IL (1)	8	10
42	IL_05145.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW-cWW History status: Exact match Triple non-canonical cWW pairs (4) Other IL (1) Partly complementary (1)	10	9
43	IL_90933.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW with bulges (6) Isolated non-canonical cWW pair (2) Isolated basepair with bulged bases (1)	6	9
44	IL_95601.2 View exemplar Basepair signature: cWW-tSH-cWW History status: Exact match Major groove platform with intercalation (6) Minor groove platform (1) Major groove minor groove platform; mini C-loop (1) Major groove platform (1)	5	9
45	IL_93341.1 View exemplar Basepair signature: cWW-cWW-cSH-cSH-cWW History status: Exact match 8-nt loop receptor (5)	0	9
46	IL_51265.2 View exemplar Basepair signature: cWW-tSS-tSH-L-tHS-cWW History status: Exact match Kink-turn from U4 (5) Kink-turn (3) Kink-turn from T-box riboswitch (1)	0	9
47	IL_40562.1 View exemplar Basepair signature: cWW-L-R-L-tHS-cWW History status: Exact match AAA cross-strand stack (5) UAA/GAN (2) UAA/GAN variation (1) UAA/GAN related (1)	9	9
48	IL_32396.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Major groove intercalation (2) Multiple bulged bases (2) Single bulged A (1)	4	9
49	IL_76042.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin; G-bulge (7) Sarcin-Ricin target in LSU H95; G-bulge (1)	13	8
50	IL_87332.2 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Minor groove platform with extra cWW (5)	7	8
51	IL_76223.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove platform (7) Other IL (1)	5	8
52	IL_19389.5 View exemplar Basepair signature: cWW-L-cSH-cWW History status: Exact match Major groove platform with intercalated tWH (5) Other IL (1)	6	8
53	IL_45433.1 View exemplar Basepair signature: cWW-L-R-L-R-cWW History status: Exact match Tandem non-canonical cWW pairs (2) Other IL (1) tSH-tHW (1) Isolated cWH basepair with non-canonical cWW (1)	8	8
54	IL_63450.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW History status: Exact match Major groove platform with extra pair (4)	7	7
55	IL_65969.1 View exemplar Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (6)	12	7
56	IL_67060.1 View exemplar Basepair signature: cWW-tWH-cSH-L-cWS-cWW History status: Exact match C-loop (7)	7	7
57	IL_16458.1 View exemplar Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-cWW History status: Exact match Sarcin-Ricin target in LSU H95; G-bulge (4) 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1) 8x6 Sarcin-Ricin with inserted A; G-bulge (1) 7x6 Sarcin-Ricin; G-bulge (1)	13	7
58	IL_47263.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Major groove platform with extra pair (5) Other IL (1)	7	7
59	IL_04668.1 View exemplar Basepair signature: cWW-cWW-cWW-L-R-L-R-cWW History status: Exact match Other IL (1) Tandem non-canonical cWW pairs with near WC pairs (1)	12	7
60	IL_15052.1 View exemplar Basepair signature: cWW-cSH-cWS-cWW History status: Exact match Minor groove platform (7)	0	7
61	IL_54997.6 View exemplar Basepair signature: cWW-tWW-cWW History status: Exact match Isolated tWW turn (7)	6	7
62	IL_58103.5 View exemplar Basepair signature: cWW-L-L-cWS-tSW-cWW History status: Exact match Symmetric double minor groove platform (6) Minor groove platform (1)	8	7
63	IL_17470.5 View exemplar Basepair signature: cWW-R-tHW-tHW-tWW-cWW History status: Exact match tHW-tHW cross-strand stack (6)	11	6
64	IL_80545.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (3)	6	6
65	IL_83162.4 View exemplar Basepair signature: cWW-tSH-L-L-tHH-cWW History status: Exact match tHS double platform (4)	10	6
66	IL_48100.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match 180 degree turn (1)	5	6
67	IL_58384.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (3) Minor groove platform (1) Major groove intercalation (1)	4	6
68	IL_90991.5 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (6)	4	6
69	IL_25186.1 View exemplar Basepair signature: cWW-L-R-L-R-cWW-cWW History status: Exact match	0	6
70	IL_76308.4 View exemplar Basepair signature: cWW-tSH-tHW-L-R-cWW-cWW History status: Exact match tSH-tHW-tHS-cWW (5) Tandem non-canonical cWW pairs with near WC pairs (1)	12	6
71	IL_66414.5 View exemplar Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW History status: Exact match Triple sheared with non-canonical cWW (6)	14	6
72	IL_07486.1 View exemplar Basepair signature: cWW-tSS-tSH-L-tHS-cWW-cWW History status: Exact match Kink-turn (5)	0	6
73	IL_56455.3 View exemplar Basepair signature: cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW History status: Exact match Bacterial 5S Loop E (6)	18	6
74	IL_04650.1 View exemplar Basepair signature: cWW-cSH-cWW-L-L-R-L History status: Exact match Minor groove platform (2)	0	6
75	IL_23164.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	0	6
76	IL_02284.4 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Decoding loop related (1)	6	6
77	IL_37712.1 View exemplar Basepair signature: cWW-L-L-L-cWW History status: Exact match C-loop (4) Major groove minor groove platform with tHH (2)	7	6
78	IL_45944.3 View exemplar Basepair signature: cWW-L-cWW-L-tWH-L-R-L History status: Exact match	0	5
79	IL_55351.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	5
80	IL_65510.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L History status: Exact match	0	5
81	IL_53251.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match Isolated non-canonical cWW contact (5)	6	5
82	IL_69145.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match Pseudoknot (3)	0	5
83	IL_49767.5 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN with extra cWW (5)	11	5
84	IL_58502.1 View exemplar Basepair signature: cWW-cWW-L-R-L-cWW History status: Exact match Major groove platform with intercalation (1)	0	5
85	IL_60823.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Tandem non-canonical cWW pairs (1)	7	5
86	IL_12566.2 View exemplar Basepair signature: cWW-L-tHS-L-cWW-L History status: Exact match	9	5
87	IL_60992.5 View exemplar Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW History status: Exact match	16	5
88	IL_04638.1 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cSH-cWW-L History status: Exact match tSH-tHS-tHW (4)	13	5
89	IL_16386.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Intercalated cWS (1)	0	5
90	IL_47078.1 View exemplar Basepair signature: cWW-cWS-L-cWW-L History status: Exact match Minor groove platform (5)	0	5
91	IL_57188.3 View exemplar Basepair signature: cWW-cSH-tWW-L-tWW-cWW-cSH History status: Exact match Kink-turn related (4)	11	5
92	IL_68511.1 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: Exact match Non canonical cWW and near pair (1) Tandem non-canonical cWW pairs (1)	8	5
93	IL_62552.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L History status: Exact match	0	5
94	IL_23544.2 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	5
95	IL_17069.3 View exemplar Basepair signature: cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW History status: Exact match Kink-turn related (5)	13	5
96	IL_90538.3 View exemplar Basepair signature: cWW-cSS-tSS-L-tSH-tSS-tHS-L-bif-cWW History status: Exact match Kink-turn (5)	13	5
97	IL_19954.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW History status: Exact match	12	4
98	IL_55178.1 View exemplar Basepair signature: cWW-cWW-tWW-cWW History status: Exact match tWW and non-canonical cWW (1) Tandem non-canonical cWW pairs (1) Non canonical cWW and near pair (1) tWW and near cWH (1)	0	4
99	IL_29346.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match Left turn (3)	0	4
100	IL_80604.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match tWH-tWH-tHW-tHW (3)	14	4
101	IL_49460.1 View exemplar Basepair signature: cWW-L-R-L-R-L-L-cWW History status: Exact match	10	4
102	IL_06136.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Quadruple sheared (4)	0	4
103	IL_55953.3 View exemplar Basepair signature: cWW-tSH-tHS-R-L-L-R-cWW History status: Exact match	0	4
104	IL_58686.1 View exemplar Basepair signature: cWW-cWW-tSH-cSH-cWW History status: Exact match Multiple bulged bases with near cWW (1)	9	4
105	IL_88269.3 View exemplar Basepair signature: cWW-L-R-cSH-tWH-tHS-cWW History status: Exact match 6x5 Sarcin-Ricin; G-bulge (3) tSH-tHW-tWW (1)	0	4
106	IL_38862.1 View exemplar Basepair signature: cWW-L-R-tWH-tHS-cWW History status: Exact match tSH-tHW-tHS (2) 5x5 Sarcin-Ricin with intercalated A; G-bulge (2)	10	4
107	IL_50715.1 View exemplar Basepair signature: cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L History status: Exact match	21	4
108	IL_81589.1 View exemplar Basepair signature: cWW-L-R-L-L-L-R-tSW-L-cWW History status: Exact match	13	4
109	IL_08296.3 View exemplar Basepair signature: cWW-L-tHS-L-cWW History status: Exact match	8	4
110	IL_74697.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Decoding loop related (1)	7	4
111	IL_68506.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW History status: Exact match	0	4
112	IL_54678.4 View exemplar Basepair signature: cWW-cWW History status: Exact match Major groove platform with intercalation (1)	4	4
113	IL_97697.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match Reverse turn (4)	0	4
114	IL_02349.4 View exemplar Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with bulged A; G-bulge (2)	0	3
115	IL_34470.2 View exemplar Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2) 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	0	3
116	IL_34739.1 View exemplar Basepair signature: cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R History status: Exact match	0	3
117	IL_24606.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)	14	3
118	IL_65851.2 View exemplar Basepair signature: cWW-L-R-tSH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS with extra cWW pairs (1)	0	3
119	IL_18471.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW History status: Exact match Major groove platform with extra cWW (2)	7	3
120	IL_69440.1 View exemplar Basepair signature: cWW-L-R-cSH-cWW History status: Exact match	8	3
121	IL_07144.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L History status: Exact match Other IL (1)	10	3
122	IL_18472.2 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match Symmetric double minor groove platform (1)	0	3
123	IL_93630.1 View exemplar Basepair signature: cWW-L-R-L-L-L-cWW History status: Exact match C-loop with extra cWW pair (1)	9	3
124	IL_76319.1 View exemplar Basepair signature: cWW-L-cWS-cWW History status: Exact match Isolated cWS basepair (2)	7	3
125	IL_44312.1 View exemplar Basepair signature: cWW-tWH-R-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (2)	9	3
126	IL_64181.1 View exemplar Basepair signature: cWW-L-R-cWW-cWW-cWW History status: Exact match Triple sheared related (1)	10	3
127	IL_74051.1 View exemplar Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L History status: Exact match Kink-turn (3)	0	3
128	IL_26785.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW History status: Exact match 10x8 Sarcin-Ricin; G-bulge (3)	0	3
129	IL_96303.1 View exemplar Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-R History status: Exact match	0	3
130	IL_30542.2 View exemplar Basepair signature: cWW-L-R-L-L-cWW History status: Exact match	8	3
131	IL_93830.2 View exemplar Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW History status: Exact match 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)	14	3
132	IL_27393.7 View exemplar Basepair signature: cWW-L-cWW-L-L-R History status: Exact match	0	3
133	IL_58960.1 View exemplar Basepair signature: cWW-L-cWW-L-tWW-L-R-L History status: Exact match	0	3
134	IL_67474.4 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match 180 degree turn (2)	6	3
135	IL_90318.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-cWW History status: Exact match UAA/GAN with extra pair (3)	0	3
136	IL_70627.2 View exemplar Basepair signature: cWW-tWH-L-R-cWW History status: Exact match	0	3
137	IL_19557.2 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Isolated cWH basepair (1)	5	3
138	IL_82426.4 View exemplar Basepair signature: cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R History status: Exact match Part of G-quadruplex (3)	0	3
139	IL_09129.1 View exemplar Basepair signature: cWW-tWH-tWH-L-R-L-R-tWW-cWW History status: Exact match	0	3
140	IL_75283.2 View exemplar Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R History status: Exact match	0	3
141	IL_87284.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (3)	0	3
142	IL_68574.2 View exemplar Basepair signature: cWW-tHH-tHS-cWW History status: Exact match	8	3
143	IL_64900.1 View exemplar Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L History status: Exact match Kink-turn (3)	0	3
144	IL_75461.3 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match 180 degree turn (3)	7	3
145	IL_52708.1 View exemplar Basepair signature: cWW-tSS-cWW History status: Exact match Multiple bulged bases (1)	0	2
146	IL_10207.1 View exemplar Basepair signature: cWW-L-R-L-L-R-L-cWW-cSW-cWW-cSH History status: Exact match Minor groove platform related (2)	13	2
147	IL_15218.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L History status: Exact match	0	2
148	IL_23992.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-cWW History status: Exact match	0	2
149	IL_37722.1 View exemplar Basepair signature: cWW-L-tSH-L-tHW-tHS-R-cWW-L History status: Exact match Kink-turn (1)	0	2
150	IL_65263.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	2
151	IL_42032.1 View exemplar Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L History status: Exact match	0	2
152	IL_10484.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (2)	0	2
153	IL_73448.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R-L History status: Exact match	0	2
154	IL_93211.1 View exemplar Basepair signature: cWW-cWS-cWW-L-R-cWW-L History status: Exact match	0	2
155	IL_02656.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match Other IL (1)	0	2
156	IL_38394.1 View exemplar Basepair signature: cWW-tWH-cWW-L-L-R-L History status: Exact match Stack outside cWW (1)	0	2
157	IL_58490.1 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match Multiple bulged bases (1) Bulged stacked bases (1)	6	2
158	IL_76195.2 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match	6	2
159	IL_80884.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-L History status: Exact match	0	2
160	IL_84251.1 View exemplar Basepair signature: cWW-L-tHS-cWW History status: Exact match	0	2
161	IL_38634.5 View exemplar Basepair signature: cWW-cWH-L-R-cWW History status: Exact match cWH basepair and non-canonical AC (2)	0	2
162	IL_30149.1 View exemplar Basepair signature: cWW-L-R-L-R-tWH-L-R-L-R-L-cWW History status: Exact match	0	2
163	IL_60192.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW History status: Exact match Kink-turn (2)	12	2
164	IL_91549.1 View exemplar Basepair signature: cWW-tSW-L-L-cSW-cWW History status: Exact match	9	2
165	IL_38684.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match	0	2
166	IL_53581.1 View exemplar Basepair signature: cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW History status: Exact match Kink-turn related (2)	0	2
167	IL_81522.1 View exemplar Basepair signature: cWW-cWS-L-cWW History status: Exact match Major groove minor groove platform with intercalation; mini C-loop (2)	0	2
168	IL_91592.1 View exemplar Basepair signature: cWW-L-tHH-L-cWW-L-L History status: Exact match	0	2
169	IL_22248.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW-L History status: Exact match Other IL (1)	0	2
170	IL_34822.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	0	2
171	IL_46559.1 View exemplar Basepair signature: cWW-L-tHH-L-R-L-cWW-L-R History status: Exact match	0	2
172	IL_63797.1 View exemplar Basepair signature: cWW-cWS-cWW History status: Exact match Major groove intercalation (1) Minor groove platform (1)	5	2
173	IL_26728.1 View exemplar Basepair signature: cWW-cSH-R-cSH-cWW-cWW History status: Exact match	9	2
174	IL_35728.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-tHH-tHS-cWW-cWW History status: Exact match 9x8 Sarcin-Ricin; G-bulge (1) tSH-tHW-tHH-tHS (1)	17	2
175	IL_93699.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tHS-L-cWW-L History status: Exact match Kink-turn (1)	0	2
176	IL_53749.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L History status: Exact match	0	2
177	IL_81631.1 View exemplar Basepair signature: cWW-L-R-cSH-R-R-L-R-cWW History status: Exact match 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)	0	2
178	IL_36143.2 View exemplar Basepair signature: cWW-R-cWW History status: Exact match	5	2
179	IL_36973.5 View exemplar Basepair signature: cWW-tSH-L-R-R-R-L-L-cWW-cWW History status: Exact match	14	2
180	IL_77870.1 View exemplar Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW History status: Exact match	0	2
181	IL_45371.1 View exemplar Basepair signature: cWW-cWW-L-R-cWW History status: Exact match	0	2
182	IL_92192.1 View exemplar Basepair signature: cWW-L-L-L-cWW-cWW History status: Exact match Other IL (1)	9	2
183	IL_01206.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	0	2
184	IL_14768.1 View exemplar Basepair signature: cWW-cWW-L-R-tHS-cWW-cWW History status: Exact match Triple sheared related (1)	12	2
185	IL_86929.1 View exemplar Basepair signature: cWW-cWW-tSH-tSH-L-R-cWW History status: Exact match Double sheared; A in syn; two near cWW pairs (1) Triple sheared with non-canonical cWW (1)	12	2
186	IL_28026.1 View exemplar Basepair signature: cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW History status: Exact match	15	2
187	IL_59302.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match	0	2
188	IL_78349.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW-L History status: Exact match	0	2
189	IL_19724.1 View exemplar Basepair signature: cWW-cSH-R-R-cWW History status: Exact match	7	2
190	IL_57343.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match	0	2
191	IL_64879.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW History status: Exact match Triple sheared related (2)	11	2
192	IL_52493.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match	0	2
193	IL_59423.1 View exemplar Basepair signature: cWW-L-R-R-tHS-cWW History status: Exact match	9	2
194	IL_47973.1 View exemplar Basepair signature: cWW-cSH-R-L-L-cWW History status: Exact match	8	2
195	IL_41414.1 View exemplar Basepair signature: cWW-L-R-L-cWW-tWH-cWW-L-L-L-R-L-R-cSH-L-L History status: Exact match	0	1
196	IL_68633.1 View exemplar Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L History status: Exact match 9x7 Sarcin-Ricin with inserted C; G-bulge (1)	0	1
197	IL_90720.1 View exemplar Basepair signature: cWW-L-L-tHS-R-cWW History status: Exact match	9	1
198	IL_98353.1 View exemplar Basepair signature: cWW-cWS-L-L-cWW History status: Exact match	8	1
199	IL_33557.1 View exemplar Basepair signature: cWW-tHH-R-L-R-L-L-R-L-R-cWW History status: Exact match Kink-turn related (1)	0	1
200	IL_62947.1 View exemplar Basepair signature: cWW-cWW-cWW-R-cWW-R-cWW-R-cWW-R-L-tSH-L-L-L-L History status: Exact match	0	1
201	IL_93094.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW History status: Exact match Reverse kink-turn (1)	0	1
202	IL_94878.1 View exemplar Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW History status: Exact match	25	1
203	IL_17765.1 View exemplar Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L History status: Exact match	0	1
204	IL_59724.1 View exemplar Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW History status: Exact match 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)	0	1
205	IL_69091.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L History status: Exact match	0	1
206	IL_20245.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	0	1
207	IL_84205.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match 180 degree turn (1)	0	1
208	IL_15484.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-cSH History status: Exact match	0	1
209	IL_24499.1 View exemplar Basepair signature: cWW-cWS-L-R-L-R-cWW-L-cSH-L History status: Exact match	0	1
210	IL_87677.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (1)	12	1
211	IL_17971.1 View exemplar Basepair signature: cWW-tWW-L-tWW-L-cWW History status: Exact match	10	1
212	IL_29509.1 View exemplar Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (1)	15	1
213	IL_60171.1 View exemplar Basepair signature: cWW-L-tWH-R-R-R-cWW History status: Exact match Major groove platform; stack outside cWW (1)	8	1
214	IL_10810.1 View exemplar Basepair signature: cWW-L-cWS-cSH-cWW History status: Exact match	0	1
215	IL_20463.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R History status: Exact match 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	0	1
216	IL_46112.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L History status: Exact match	0	1
217	IL_55896.1 View exemplar Basepair signature: cWW-tSH-tHS-tWS-cWW History status: Exact match Triple sheared (1)	10	1
218	IL_73662.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R History status: Exact match	0	1
219	IL_88190.1 View exemplar Basepair signature: cWW-L-R-tHS-L-R-L-R-cWW History status: Exact match	12	1
220	IL_95811.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-R-L History status: Exact match Vitamin B12 Aptamer (1)	0	1
221	IL_06300.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	0	1
222	IL_43140.1 View exemplar Basepair signature: cWW-L-cWW-cWH-L-L History status: Exact match	0	1
223	IL_11882.1 View exemplar Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW History status: Exact match	0	1
224	IL_21121.1 View exemplar Basepair signature: cWW-tSW-cWS-cSH-tSW-tWH-R-R-cWW-cWW History status: Exact match	0	1
225	IL_34780.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW History status: Exact match Kink-turn (1)	0	1
226	IL_46461.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L-L-L-R-L-R-tSW-R-R-L-R-L-R-L-R History status: Exact match	0	1
227	IL_73759.1 View exemplar Basepair signature: cWW-cSH-tHS-cWH-cHW-cWW History status: Exact match Part of G-quadruplex (1)	0	1
228	IL_84409.1 View exemplar Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L History status: Exact match	0	1
229	IL_93585.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-tWH-L-cSH-L History status: Exact match Kink-turn related (1)	0	1
230	IL_04105.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R History status: Exact match	0	1
231	IL_15978.1 View exemplar Basepair signature: cWW-tSH-L-cWS-cWW-L History status: Exact match	10	1
232	IL_95961.1 View exemplar Basepair signature: cWW-tSH-L-cWW-L History status: Exact match	0	1
233	IL_30174.1 View exemplar Basepair signature: cWW-cSH-cSH-cWW History status: Exact match Minor groove platform (1)	6	1
234	IL_43166.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R History status: Exact match	0	1
235	IL_69573.1 View exemplar Basepair signature: cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW History status: Exact match	17	1
236	IL_56105.1 View exemplar Basepair signature: cWW-tSH-tSH-cWW-L History status: Exact match	8	1
237	IL_84665.1 View exemplar Basepair signature: cWW-L-cSW-cWW-L-L-R-L-R-L-R-L History status: Exact match	0	1
238	IL_16073.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-L-L-R History status: Exact match	0	1
239	IL_95993.1 View exemplar Basepair signature: cWW-R-tSS-tWW-tWW-cWW History status: Exact match Kink-turn related (1)	11	1
240	IL_19023.1 View exemplar Basepair signature: cWW-cHW-L-cWW-L-L-R-L-R-L-R History status: Exact match	0	1
241	IL_30441.1 View exemplar Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R History status: Exact match	0	1
242	IL_53601.1 View exemplar Basepair signature: cWW-tHW-tHS-cWW-cWW History status: Exact match	10	1
243	IL_70096.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Kink-turn related (1)	0	1
244	IL_91710.1 View exemplar Basepair signature: cWW-L-cWW-L-L-tWH-R-L History status: Exact match	11	1
245	IL_12750.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	0	1
246	IL_22436.1 View exemplar Basepair signature: cWW-L-tWH-tHW-cWW-cWW History status: Exact match Kink-turn related (1)	0	1
247	IL_46732.1 View exemplar Basepair signature: cWW-R-R-tHS-cWW History status: Exact match	8	1
248	IL_85222.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match	0	1
249	IL_51101.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	0	1
250	IL_58819.1 View exemplar Basepair signature: cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW History status: Exact match	0	1
251	IL_89055.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-cWW-L-L History status: Exact match	0	1
252	IL_08001.1 View exemplar Basepair signature: cWW-L-R-tSH-L-R-L-R-L-R-L-R-L-L-cWW History status: Exact match tSH-tHW-tHH-tHS (1)	18	1
253	IL_19048.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW History status: Exact match	0	1
254	IL_44325.1 View exemplar Basepair signature: cWW-cWH-cWW-L History status: Exact match	0	1
255	IL_61242.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-cWW History status: Exact match	0	1
256	IL_70149.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	0	1
257	IL_91920.1 View exemplar Basepair signature: cWW-cWW-tHH-cWW History status: Exact match	0	1
258	IL_13394.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	0	1
259	IL_22821.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match Pseudoknot (1)	0	1
260	IL_74184.1 View exemplar Basepair signature: cWW-L-tHS-L-cWW-L-L-L History status: Exact match	0	1
261	IL_85630.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L History status: Exact match	0	1
262	IL_38969.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match Reverse kink-turn related (1)	0	1
263	IL_51191.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match	0	1
264	IL_77827.1 View exemplar Basepair signature: cWW-tSS-R-L-L-R-L-cWW-tHH-L-R-L-R-L-R-L-R-L-R-L-cSH-R-R-L-R-L-R-cWW-R-cWW-R-L-R-L-R-L-R-R History status: Exact match	0	1
265	IL_96371.1 View exemplar Basepair signature: cWW-tHH-cWW History status: Exact match	0	1
266	IL_53787.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L-R History status: Exact match Pseudoknot (1)	0	1
267	IL_00559.1 View exemplar Basepair signature: cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L History status: Exact match	0	1
268	IL_14397.1 View exemplar Basepair signature: cWW-tWH-tHH-tHS-cWW History status: Exact match	10	1
269	IL_23152.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L History status: Exact match	0	1
270	IL_47108.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-cWW History status: Exact match	0	1
271	IL_56867.1 View exemplar Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW History status: Exact match	13	1
272	IL_64739.1 View exemplar Basepair signature: cWW-tSH-L-cWW History status: Exact match	7	1
273	IL_85652.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L History status: Exact match	0	1
274	IL_94165.1 View exemplar Basepair signature: cWW-L-R-L-tHS-cWW History status: Exact match	0	1
275	IL_04667.1 View exemplar Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW History status: Exact match Kink-turn related (1)	13	1
276	IL_39287.1 View exemplar Basepair signature: cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L History status: Exact match Kink-turn related (1)	0	1
277	IL_59281.1 View exemplar Basepair signature: cWW-cWW-cSW-cSH-cWW History status: Exact match	9	1
278	IL_90346.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match	0	1
279	IL_96451.1 View exemplar Basepair signature: cWW-R-cWH-L-L-L-cWW History status: Exact match	9	1
280	IL_31504.1 View exemplar Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L History status: Exact match	0	1
281	IL_61300.1 View exemplar Basepair signature: cWW-cSS-tSS-L-tHW-cWW-L-R-L-R-L-R History status: Exact match	0	1
282	IL_70801.1 View exemplar Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW History status: Exact match	0	1
283	IL_64842.1 View exemplar Basepair signature: cWW-L-tWH-L-cWW-L-cSH History status: Exact match	0	1
284	IL_74736.1 View exemplar Basepair signature: cWW-tSH-L-R-R-L-cWW History status: Exact match	9	1
285	IL_94351.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tHS-cWW History status: Exact match	0	1
286	IL_16665.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match	0	1
287	IL_90348.1 View exemplar Basepair signature: cWW-cSW-L-cWW-L History status: Exact match	0	1
288	IL_97253.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	0	1
289	IL_31890.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L History status: Exact match	0	1
290	IL_54896.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R History status: Exact match	0	1
291	IL_92343.1 View exemplar Basepair signature: cWW-L-R-R-R-L-L-cWW History status: Exact match	10	1
292	IL_01393.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match	0	1
293	IL_37629.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Stack outside cWW (1)	5	1
294	IL_47972.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match	0	1
295	IL_94501.1 View exemplar Basepair signature: cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW History status: Exact match	15	1
296	IL_04736.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	0	1
297	IL_28564.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	0	1
298	IL_80412.1 View exemplar Basepair signature: cWW-tSW-L-cWW-L-L-R-L History status: Exact match	0	1
299	IL_19852.1 View exemplar Basepair signature: cWW-tWH-cWW-cWH-cWH-cWH History status: Exact match Part of G-quadruplex (1)	0	1
300	IL_45488.1 View exemplar Basepair signature: cWW-cWW-L-R-tWH-L-R-cWW History status: Exact match	0	1
301	IL_62654.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: Exact match tSH-tHH-tHS (1)	0	1
302	IL_23735.1 View exemplar Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW History status: Exact match	26	1
303	IL_87290.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L History status: Exact match Kink-turn related (1)	0	1
304	IL_94777.1 View exemplar Basepair signature: cWW-cSH-L-R-L-L-R-cWW History status: Exact match	10	1

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Nucleotide numbers

Exact match 304;

Internal Loop Motif Atlas Release 3.78 Download CSV JSON annotations

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