Motif IL_02284.8 Version IL_02284.8 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-2 | 1-7 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3NDB_006 | 3NDB | 0.6180 | 0 | M | SRP RNA | U | 175 | A | 176 | A | 177 | C | 178 | * | G | 152 | A | 153 | G | 154 | cWW | cWW | ||
2 | IL_5J7L_065 | 5J7L | 0.3477 | 0 | AA | SSU rRNA | U | 1445 | A | 1446 | A | 1447 | C | 1448 | * | G | 1455 | A | 1456 | G | 1457 | cWW | cWW | ||
3 | IL_4WF9_107 | 4WF9 | 0.0000 | 0 | X | LSU rRNA | U | 2891 | G | 2892 | A | 2893 | C | 2894 | * | G | 2863 | A | 2864 | G | 2865 | cWW | cWW | ||
4 | IL_7A0S_100 | 7A0S | 0.2599 | 0 | Decoding loop related | X | LSU rRNA | G | 2846 | G | 2847 | A | 2848 | C | 2849 | * | G | 2818 | G | 2819 | C | 2820 | cWW | cWW | |
5 | IL_7WIE_002 | 7WIE | 0.8880 | 5 | V | RNA (50-MER) | U | 17 | A | 20 | A | 21 | G | 25 | * | C | 43 | U | 44 | A | 45 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAAC*GAG | 2 |
UGAC*GAG | 1 |
GGAC*GGC | 1 |
UUCAACUCG*CUA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA*A | 2 |
GA*A | 1 |
GA*G | 1 |
UCAACUC*U | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Decoding loop related (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.26 | Avg 0.49 | Max 0.89
Coloring options: