Motif IL_02349.1 Version IL_02349.1 of this group appears in releases 3.2 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-5 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4Y1J_001 | 4Y1J | 0.0000 | 1 | 8x6 Sarcin-Ricin with bulged A; G-bulge | A | yybP-ykoY riboswitch | G | 7 | G | 8 | G | 9 | G | 11 | U | 12 | A | 13 | G | 14 | * | C | 91 | A | 92 | A | 93 | G | 94 | A | 95 | C | 96 | cWW | tSH | tWH | cSH | tWH | tHS | cWW |
| 2 | IL_4Y1M_006 | 4Y1M | 0.0891 | 1 | 8x6 Sarcin-Ricin with bulged A; G-bulge | B | E. coli yybP-ykoY riboswitch | G | 8 | G | 9 | G | 10 | G | 12 | U | 13 | A | 14 | G | 15 | * | C | 96 | G | 97 | A | 98 | G | 99 | A | 100 | C | 101 | cWW | tSH | tWH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAGUAG*CAAGAC | 1 |
| GGGAGUAG*CGAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAGUA*AAGA | 1 |
| GGAGUA*GAGA | 1 |
- Annotations
-
- 8x6 Sarcin-Ricin with bulged A; G-bulge (2)
- Basepair signature
- cWW-tSH-tWH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.04 | Max 0.09
Coloring options: