Motif IL_03347.1 Version IL_03347.1 of this group appears in releases 3.18 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_064 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 1440 | G | 1441 | G | 1442 | G | 1447 | * | C | 1459 | A | 1460 | G | 1461 | cWW | tSH | cWW | |||
| 2 | IL_5TBW_105 | 5TBW | 0.9255 | 1 | Major groove minor groove platform with extra cWW | 1 | LSU rRNA | U | 2858 | U | 2859 | U | 2861 | U | 2862 | * | G | 2828 | U | 2829 | G | 2830 | cWW | ncWH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGGAG*CAG | 1 |
| UUUUU*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGA*A | 1 |
| UUU*U | 1 |
- Annotations
-
- (1)
- Major groove minor groove platform with extra cWW (1)
- Basepair signature
- cWW-tSH-cWW-cWW
- Heat map statistics
- Min 0.93 | Avg 0.46 | Max 0.93
Coloring options: