Motif IL_03347.1 Version IL_03347.1 of this group appears in releases 3.18 to 3.19

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	1-7	2-3	2-6	3-6	4-5
1	IL_4LFB_064	4LFB	0.0000	2		A	SSU rRNA	C	1440	G	1441	G	1442	G	1447	*	C	1459	A	1460	G	1461	cWW		tSH		cWW
2	IL_5TBW_105	5TBW	0.9255	1	Major groove minor groove platform with extra cWW	1	LSU rRNA	U	2858	U	2859	U	2861	U	2862	*	G	2828	U	2829	G	2830	cWW	ncWH		cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGGGAG*CAG	1
UUUUU*GUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGGA*A	1
UUU*U	1

Release history

Release	3.18	3.19
Date	2019-05-03	2019-05-31
Status	New id, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (1)
Major groove minor groove platform with extra cWW (1)
Basepair signature: cWW-tSH-cWW-cWW
Heat map statistics: Min 0.93 | Avg 0.46 | Max 0.93

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