Motif IL_03783.1 Version IL_03783.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-10 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_061 | 4CUX | 0.0000 | 1 | 2 | SSU rRNA | A | 1230 | U | 1231 | U | 1232 | G | 1233 | A | 1234 | * | U | 1251 | C | 1252 | U | 1253 | U | 1254 | G | 1255 | U | 1257 | ntHS | cWW | ncWS | cWw | ncWW | ncWW |
| 2 | IL_4W21_160 | 4W21 | 0.9417 | 0 | 5 | LSU rRNA | C | 4924 | U | 4925 | C | 4926 | G | 4927 | C | 4928 | * | G | 4891 | A | 4892 | A | 4893 | A | 4894 | C | 4895 | G | 4896 | cWW | ncHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGA*UCUUGAU | 1 |
| CUCGC*GAAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUG*CUUGA | 1 |
| UCG*AAAC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_03783.1 | Only in the parent motif |
|---|---|---|---|
| IL_06527.1 Compare | IL_4CUX_061 | IL_4W21_160 | IL_1VWW_058 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-R-L-L-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: