Motif IL_03932.2 Version IL_03932.2 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-4	1-5	2-3	4-5
1	IL_5TBW_092	5TBW	0.7913	2	Major groove platform with intercalation	1	LSU rRNA	G	2396	A	2398	*	U	2981	A	2982	C	2984		cWW	cWW	cSH
2	IL_5TBW_111	5TBW	0.3158	1	Major groove platform with intercalation	1	LSU rRNA	U	2891	A	2892	*	U	2909	A	2910	G	2912	tHS	cWW	cWW
3	IL_4V9F_089	4V9F	0.1490	1	Major groove platform with intercalation	0	LSU rRNA	U	2557	G	2558	*	C	2575	A	2576	G	2578	ntHS	cWW	cWW
4	IL_4WF9_097	4WF9	0.0892	1	Major groove platform with intercalation	X	LSU rRNA	U	2549	G	2550	*	C	2567	A	2568	G	2570	ntHS	cWW	cWW
5	IL_4Y4O_274	4Y4O	0.0833	1	Major groove platform with intercalation (H)	2A	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	G	2543	ntHS	cWW	cWW
6	IL_5J7L_342	5J7L	0.0000	1	Major groove platform with intercalation	DA	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	G	2543	ntHS	cWW	cWW
7	IL_7A0S_091	7A0S	0.0981	1	Major groove platform with intercalation	X	LSU rRNA	U	2501	G	2502	*	C	2519	A	2520	G	2522		cWW	cWW
8	IL_4KQY_009	4KQY	0.3888	1	Minor groove platform	A	SAM-I riboswitch	C	49\|\|\|\|4_555	G	50\|\|\|\|4_555	*	C	73\|\|\|\|4_555	A	74\|\|\|\|4_555	G	76\|\|\|\|4_555		cWW	cWW	ncSH
9	IL_4KQY_004	4KQY	0.3888	1	Minor groove platform	A	SAM-I riboswitch	C	49	G	50	*	C	73	A	74	G	76		cWW	cWW	ncSH
10	IL_5TBW_070	5TBW	0.8390	0	Single stack bend	1	LSU rRNA	C	1670	C	1671	*	G	1776	U	1777	G	1778		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UG*CAAG	5
CG*CAAG	2
GAA*UACC	1
UA*UAAG	1
CC*GUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	8
A*AC	1
*U	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform with intercalation (6)
Minor groove platform (2)
Major groove platform with intercalation (H) (1)
Single stack bend (1)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.08 | Avg 0.43 | Max 0.99

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