#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-34-5
1 IL_5TBW_0925TBW0.79132Major groove platform with intercalation1 LSU rRNAG2396A2398*U2981A2982C2984cWWcWWcSH
2 IL_5TBW_1115TBW0.31581Major groove platform with intercalation1 LSU rRNAU2891A2892*U2909A2910G2912tHScWWcWW
3 IL_4V9F_0894V9F0.14901Major groove platform with intercalation0 LSU rRNAU2557G2558*C2575A2576G2578ntHScWWcWW
4 IL_7RQB_0997RQB0.07821Major groove platform with intercalation1A LSU rRNAU2522G2523*C2540A2541G2543ntHScWWcWW
5 IL_4WF9_0974WF90.08921Major groove platform with intercalationX LSU rRNAU2549G2550*C2567A2568G2570ntHScWWcWW
6 IL_5J7L_3425J7L0.00001Major groove platform with intercalationDA LSU rRNAU2522G2523*C2540A2541G2543ntHScWWcWW
7 IL_7A0S_0917A0S0.09811Major groove platform with intercalationX LSU rRNAU2501G2502*C2519A2520G2522cWWcWW
8 IL_4KQY_0094KQY0.38881Minor groove platformA SAM-I riboswitchC49||||4_555G50||||4_555*C73||||4_555A74||||4_555G76||||4_555cWWcWWncSH
9 IL_4KQY_0044KQY0.38881Minor groove platformA SAM-I riboswitchC49G50*C73A74G76cWWcWWncSH
10 IL_5TBW_0705TBW0.83900Single stack bend1 LSU rRNAC1670C1671*G1776U1777G1778cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UG*CAAG5
CG*CAAG2
GAA*UACC1
UA*UAAG1
CC*GUG1
Non-Watson-Crick part of the motif
SequenceCounts
*AA8
A*AC1
*U1

Release history

Release3.543.553.563.573.583.593.603.61
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with intercalation (7)
  • Minor groove platform (2)
  • Single stack bend (1)
  • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.05 | Avg 0.43 | Max 0.99
    Help

    Coloring options:

    IL_5TBW_092:IL_5TBW_092 = 0IL_5TBW_092:IL_5TBW_111 = 0.7606IL_5TBW_092:IL_4V9F_089 = 0.8154IL_5TBW_092:IL_7RQB_099 = 0.8085IL_5TBW_092:IL_4WF9_097 = 0.7976IL_5TBW_092:IL_5J7L_342 = 0.7913IL_5TBW_092:IL_7A0S_091 = 0.8076IL_5TBW_092:IL_4KQY_009 = 0.7182IL_5TBW_092:IL_4KQY_004 = 0.7182IL_5TBW_092:IL_5TBW_070 = 0.9878IL_5TBW_111:IL_5TBW_092 = 0.7606IL_5TBW_111:IL_5TBW_111 = 0IL_5TBW_111:IL_4V9F_089 = 0.2309IL_5TBW_111:IL_7RQB_099 = 0.288IL_5TBW_111:IL_4WF9_097 = 0.2765IL_5TBW_111:IL_5J7L_342 = 0.3158IL_5TBW_111:IL_7A0S_091 = 0.3468IL_5TBW_111:IL_4KQY_009 = 0.5149IL_5TBW_111:IL_4KQY_004 = 0.5149IL_5TBW_111:IL_5TBW_070 = 0.8397IL_4V9F_089:IL_5TBW_092 = 0.8154IL_4V9F_089:IL_5TBW_111 = 0.2309IL_4V9F_089:IL_4V9F_089 = 0IL_4V9F_089:IL_7RQB_099 = 0.1115IL_4V9F_089:IL_4WF9_097 = 0.1296IL_4V9F_089:IL_5J7L_342 = 0.149IL_4V9F_089:IL_7A0S_091 = 0.2052IL_4V9F_089:IL_4KQY_009 = 0.4516IL_4V9F_089:IL_4KQY_004 = 0.4516IL_4V9F_089:IL_5TBW_070 = 0.8236IL_7RQB_099:IL_5TBW_092 = 0.8085IL_7RQB_099:IL_5TBW_111 = 0.288IL_7RQB_099:IL_4V9F_089 = 0.1115IL_7RQB_099:IL_7RQB_099 = 0IL_7RQB_099:IL_4WF9_097 = 0.0464IL_7RQB_099:IL_5J7L_342 = 0.0782IL_7RQB_099:IL_7A0S_091 = 0.1135IL_7RQB_099:IL_4KQY_009 = 0.4196IL_7RQB_099:IL_4KQY_004 = 0.4196IL_7RQB_099:IL_5TBW_070 = 0.8536IL_4WF9_097:IL_5TBW_092 = 0.7976IL_4WF9_097:IL_5TBW_111 = 0.2765IL_4WF9_097:IL_4V9F_089 = 0.1296IL_4WF9_097:IL_7RQB_099 = 0.0464IL_4WF9_097:IL_4WF9_097 = 0IL_4WF9_097:IL_5J7L_342 = 0.0892IL_4WF9_097:IL_7A0S_091 = 0.1068IL_4WF9_097:IL_4KQY_009 = 0.4225IL_4WF9_097:IL_4KQY_004 = 0.4225IL_4WF9_097:IL_5TBW_070 = 0.8655IL_5J7L_342:IL_5TBW_092 = 0.7913IL_5J7L_342:IL_5TBW_111 = 0.3158IL_5J7L_342:IL_4V9F_089 = 0.149IL_5J7L_342:IL_7RQB_099 = 0.0782IL_5J7L_342:IL_4WF9_097 = 0.0892IL_5J7L_342:IL_5J7L_342 = 0IL_5J7L_342:IL_7A0S_091 = 0.0981IL_5J7L_342:IL_4KQY_009 = 0.3888IL_5J7L_342:IL_4KQY_004 = 0.3888IL_5J7L_342:IL_5TBW_070 = 0.839IL_7A0S_091:IL_5TBW_092 = 0.8076IL_7A0S_091:IL_5TBW_111 = 0.3468IL_7A0S_091:IL_4V9F_089 = 0.2052IL_7A0S_091:IL_7RQB_099 = 0.1135IL_7A0S_091:IL_4WF9_097 = 0.1068IL_7A0S_091:IL_5J7L_342 = 0.0981IL_7A0S_091:IL_7A0S_091 = 0IL_7A0S_091:IL_4KQY_009 = 0.4034IL_7A0S_091:IL_4KQY_004 = 0.4034IL_7A0S_091:IL_5TBW_070 = 0.8905IL_4KQY_009:IL_5TBW_092 = 0.7182IL_4KQY_009:IL_5TBW_111 = 0.5149IL_4KQY_009:IL_4V9F_089 = 0.4516IL_4KQY_009:IL_7RQB_099 = 0.4196IL_4KQY_009:IL_4WF9_097 = 0.4225IL_4KQY_009:IL_5J7L_342 = 0.3888IL_4KQY_009:IL_7A0S_091 = 0.4034IL_4KQY_009:IL_4KQY_009 = 0IL_4KQY_009:IL_4KQY_004 = 0IL_4KQY_009:IL_5TBW_070 = 0.6931IL_4KQY_004:IL_5TBW_092 = 0.7182IL_4KQY_004:IL_5TBW_111 = 0.5149IL_4KQY_004:IL_4V9F_089 = 0.4516IL_4KQY_004:IL_7RQB_099 = 0.4196IL_4KQY_004:IL_4WF9_097 = 0.4225IL_4KQY_004:IL_5J7L_342 = 0.3888IL_4KQY_004:IL_7A0S_091 = 0.4034IL_4KQY_004:IL_4KQY_009 = 0IL_4KQY_004:IL_4KQY_004 = 0IL_4KQY_004:IL_5TBW_070 = 0.6931IL_5TBW_070:IL_5TBW_092 = 0.9878IL_5TBW_070:IL_5TBW_111 = 0.8397IL_5TBW_070:IL_4V9F_089 = 0.8236IL_5TBW_070:IL_7RQB_099 = 0.8536IL_5TBW_070:IL_4WF9_097 = 0.8655IL_5TBW_070:IL_5J7L_342 = 0.839IL_5TBW_070:IL_7A0S_091 = 0.8905IL_5TBW_070:IL_4KQY_009 = 0.6931IL_5TBW_070:IL_4KQY_004 = 0.6931IL_5TBW_070:IL_5TBW_070 = 0IL_5TBW_092IL_5TBW_111IL_4V9F_089IL_7RQB_099IL_4WF9_097IL_5J7L_342IL_7A0S_091IL_4KQY_009IL_4KQY_004IL_5TBW_070Discrepancy0.000.200.400.600.80
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