Motif IL_04106.1 Version IL_04106.1 of this group appears in releases 3.20 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4	3-5
1	IL_4V9F_087	4V9F	0.7128	2	Isolated non-canonical cWW with bulges	0	LSU rRNA	U	2545	U	2546	C	2547	*	G	2609	U	2610	G	2613	cWW	cWw	cWW
2	IL_3E5C_001	3E5C	0.5989	3	Isolated non-canonical cWW pair	A	SAM-III riboswitch aptamer (SMK box)	G	12	A	13	U	14	*	A	27	G	28	C	32	cWW	cWW	cWW
3	IL_6E8U_001	6E8U	0.3672	3	Isolated non-canonical cWW pair	B	RNA (37-MER)	U	30	G	31	U	32	*	A	6	A	7	A	11	cWW	cWW	cWW
4	IL_5TBW_145	5TBW	0.0000	1	Isolated non-canonical cWW pair	4	5.8S rRNA	U	64	A	65	A	66	*	U	93	C	94	A	96	cWW	ncWW	cWW
5	IL_6CZR_154	6CZR	0.4946	2		1a	SSU rRNA	U	1035	A	1038	U	1039	*	A	1186	U	1187	G	1188	cWW	ncWS		ncWS

3D structures

Complete motif including flanking bases

Sequence	Counts
UUC*GUGAG	1
GAU*AGAUGC	1
UGU*AAGGAA	1
UAA*UCGA	1
UGCAU*AUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*UGA	1
A*GAUG	1
G*AGGA	1
A*CG	1
GCA*U	1

Release history

Release	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated non-canonical cWW pair (3)
Isolated non-canonical cWW with bulges (1)
(1)
Basepair signature: cWW-cWW-cWW
Heat map statistics: Min 0.37 | Avg 0.49 | Max 0.82

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Coloring options: Nucleotide numbers

Motif IL_04106.1 Version IL_04106.1 of this group appears in releases 3.20 to 3.47 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_04106.1 Version IL_04106.1 of this group appears in releases 3.20 to 3.47

Download

Csv

Json