Motif IL_04106.1 Version IL_04106.1 of this group appears in releases 3.20 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_087 | 4V9F | 0.7128 | 2 | Isolated non-canonical cWW pair | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW | |
| 2 | IL_3E5C_001 | 3E5C | 0.5989 | 3 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | C | 32 | cWW | cWW | cWW | |
| 3 | IL_6E8U_001 | 6E8U | 0.3672 | 3 | Isolated non-canonical cWW pair | B | RNA (37-MER) | U | 30 | G | 31 | U | 32 | * | A | 6 | A | 7 | A | 11 | cWW | cWW | cWW | |
| 4 | IL_5TBW_145 | 5TBW | 0.0000 | 1 | Isolated non-canonical cWW pair | 4 | 5.8S rRNA | U | 64 | A | 65 | A | 66 | * | U | 93 | C | 94 | A | 96 | cWW | ncWW | cWW | |
| 5 | IL_6CZR_154 | 6CZR | 0.4946 | 2 | 1a | SSU rRNA | U | 1035 | A | 1038 | U | 1039 | * | A | 1186 | U | 1187 | G | 1188 | cWW | ncWS | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUC*GUGAG | 1 |
| GAU*AGAUGC | 1 |
| UGU*AAGGAA | 1 |
| UAA*UCGA | 1 |
| UGCAU*AUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UGA | 1 |
| A*GAUG | 1 |
| G*AGGA | 1 |
| A*CG | 1 |
| GCA*U | 1 |
Release history
| Release | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (4)
- (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.37 | Avg 0.49 | Max 0.82
Coloring options: