Motif IL_05062.2 Version IL_05062.2 of this group appears in releases 3.3 to 3.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11	1-11	2-10	3-9	4-8	5-8	6-7
1	IL_5XTM_002	5XTM	0.9638	1	Other IL	B	RNA (47-MER)	G	8	A	9	U	10	G	11	A	12	A	14	*	U	35	A	36	A	37	C	38	C	39	cWW	ncWWa		tSH	cBW	cWW
2	IL_4V8P_187	4V8P	0.0000	0	Triple sheared related	D1	LSU rRNA	U	764	A	765	G	766	C	767	A	768	G	769	*	C	751	C	752	A	753	A	754	G	755	cWW	tSH	tSH		ntHS	cWW
3	IL_4V9F_018	4V9F	0.3982	0	Triple sheared related	0	LSU rRNA	A	562	C	563	G	564	A	565	A	566	U	567	*	A	591	G	592	A	593	C	594	U	595	cWW	cWB	ntSH		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUGAAA*UAACC	1
UAGCAG*CCAAG	1
ACGAAU*AGACU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUGAA*AAC	1
AGCA*CAA	1
CGAA*GAC	1

Release history

Release	3.3	3.4	3.5	3.6
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared related (2)
Other IL (1)
Basepair signature: cWW-L-R-tSH-L-R-L-cWW
Heat map statistics: Min 0.40 | Avg 0.52 | Max 0.97

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