#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 8 9 101-103-63-94-54-85-76-8
1 IL_5TBW_3735TBW0.00003Minor groove platform relatedAS 5S rRNAG21G25C26A27*U53U54A55A56G57C58cWWncWWcSWcWWcSWncSHncSH
2 IL_6CZR_1496CZR0.913301a SSU rRNAG911C912A913C914*G1362U1363U1364C1365C1366C1367cWWcWWncSWcWWncSWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
GAAAGCA*UUAAGC1
GCAC*GUUCCC1
Non-Watson-Crick part of the motif
SequenceCounts
AAAGC*UAAG1
CA*UUCC1

Release history

Release3.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform related (1)
  • (1)
  • Basepair signature
    cWW-L-R-cWW-cSW-cSH-cWW
    Heat map statistics
    Min 0.91 | Avg 0.46 | Max 0.91
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3877 s