Motif IL_05759.1 Version IL_05759.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12		13		14		15		16		17		18		19		20	1-20	2-19	4-9	5-8	6-7
1	IL_3J9W_104	3J9W	0.2192	4	BA	LSU rRNA	G	1070	G	1071	A	1073	A	1074	A	1075	G	1076	*	C	1170	G	1171	A	1172	A	1174	A	1175	U	1178	A	1179	C	1180	C	1181	G	1182	G	1183	G	1184	G	1185	C	1186	cWW	tWW	ntHH	tHS	cWW
2	IL_5J7L_281	5J7L	0.0000	4	DA	LSU rRNA	G	1024	G	1025	A	1027	A	1028	A	1029	C	1030	*	G	1124	G	1125	A	1126	G	1128	A	1129	U	1132	A	1133	A	1134	C	1135	G	1136	G	1137	G	1138	G	1139	C	1140	cWW	tWW	tHH	tHS	cWW
3	IL_5FDU_040	5FDU	0.6958	3	1A	LSU rRNA	G	1070	G	1071	A	1073	A	1074	A	1075	G	1076	*	C	1170	G	1171	A	1172	A	1174	A	1175	G	1177	A	1178	U	1179	C	1180	G	1181	G	1182	G	1183	G	1184	C	1185	cWW	tWW	tHH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAAAAG*CGAAAAUGUACCGGGGC	1
GGGAAAC*GGAAGAUGUAACGGGGC	1
GGUAAAG*CGAAAAUGAUCGGGGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAAA*GAAAAUGUACCGGGG	1
GGAAA*GAAGAUGUAACGGGG	1
GUAAA*GAAAAUGAUCGGGG	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
Heat map statistics: Min 0.22 | Avg 0.36 | Max 0.71

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