IL_3J9W_104

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAAAG*CGAAAAUGUACCGGGGC

Length

24 nucleotides

Bulged bases

3J9W|1|BA|A|1173, 3J9W|1|BA|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05759.1

Basepair signature

cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J9W|1|BA|G|1070
3J9W|1|BA|G|1071
3J9W|1|BA|A|1072
3J9W|1|BA|A|1073
3J9W|1|BA|A|1074
3J9W|1|BA|A|1075
3J9W|1|BA|G|1076
*
3J9W|1|BA|C|1170
3J9W|1|BA|G|1171
3J9W|1|BA|A|1172
3J9W|1|BA|A|1173
3J9W|1|BA|A|1174
3J9W|1|BA|A|1175
3J9W|1|BA|U|1176
3J9W|1|BA|G|1177
3J9W|1|BA|U|1178
3J9W|1|BA|A|1179
3J9W|1|BA|C|1180
3J9W|1|BA|C|1181
3J9W|1|BA|G|1182
3J9W|1|BA|G|1183
3J9W|1|BA|G|1184
3J9W|1|BA|G|1185
3J9W|1|BA|C|1186

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein bL36

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BE

50S ribosomal protein uL3

Chain BM

50S ribosomal protein uL13

Chain BP

50S ribosomal protein uL16