Motif IL_05922.1 Version IL_05922.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PHY_003 | 4PHY | 0.9116 | 1 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | * | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | |
| 2 | IL_4QIK_001 | 4QIK | 0.5921 | 0 | D+C | RNA (23-mer) | U | 11 | G | 12 | U | 13 | G | 14 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW | |
| 3 | IL_4ZNP_003 | 4ZNP | 0.0000 | 9 | A | pfI Riboswitch | C | 34 | G | 35 | U | 36 | G | 37 | * | C | 12 | U | 13 | G | 23 | cWW | cWw | cWW | |
| 4 | IL_5BTP_005 | 5BTP | 0.1288 | 8 | B | RNA (62-MER) | C | 38 | A | 39 | U | 40 | G | 41 | * | C | 15 | U | 16 | G | 25 | cWW | cWw | cWW | |
| 5 | IL_4V88_400 | 4V88 | 0.8738 | 0 | A6 | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUC*GAAC | 1 |
| UGUG*CUG | 1 |
| CGUG*CUGGCGGAUUAG | 1 |
| CAUG*CUGACGGAACG | 1 |
| CAUG*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*AA | 1 |
| GU*U | 1 |
| GU*UGGCGGAUUA | 1 |
| AU*UGACGGAAC | 1 |
| AU*G | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.61 | Max 0.98
Coloring options: