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Motif IL_06437.2 Version IL_06437.2 of this group appears in releases 3.3 to 3.11

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-32-43-4
1 IL_5J7L_3145J7L0.70191Minor groove platform, major groove intercalationDA LSU rRNAC1902G1903*C1837G1839G1840cWWcWWntSH
2 IL_4Y4O_2464Y4O0.49281Minor groove platform2A LSU rRNAC1893C1894*G1846A1848G1849cWWcWWncSW
3 IL_4V88_4544V880.42640Minor groove platformA6 SSU rRNAC1317G1318*C1306U1307G1308cWWcWWtSHcSH
4 IL_4V5O_1474V5O0.41200Minor groove platformBA SSU rRNAC1289G1290*C1278U1279G1280cWWcWWtSHncSH
5 IL_4V8P_1774V8P0.38330Minor groove platformD1 LSU rRNAG506G507*C470A471C472cWWncWWntSH
6 IL_4V5O_0874V5O0.50060Minor groove platformBA SSU rRNAA420G421*C49A50U51cWWcWWtSH
7 IL_4V88_3884V880.55390Minor groove platformA6 SSU rRNAA428G429*C50A51U52cWWcWWtSH
8 IL_4LFB_0044LFB0.59510Minor groove platformA SSU rRNAA356G357*C54A55U56cWWcWWtSH
9 IL_5J7L_0045J7L0.61730Minor groove platformAA SSU rRNAA356G357*C54A55U56cWWcWWtSH
10 IL_4LFB_0544LFB0.59910Minor groove platformA SSU rRNAG1273G1274*C1260A1261C1262cWWncWWtSH
11 IL_4UYK_0014UYK0.53320Minor groove platformRSRP RNAG77G78*C122A123C124cWWtSH
12 IL_5J7L_0485J7L0.63802Minor groove platformAA SSU rRNAG1057G1058*U1199U1202C1203cWWcWWtSH
13 IL_4LFB_0454LFB0.67772Minor groove platformA SSU rRNAG1057G1058*U1199G1202C1203cWWcWWtSH
14 IL_4IOA_0034IOA0.33810Minor groove platformX LSU rRNAG42A43*U447C448C449cWWcWWcSH
15 IL_4Y4O_1814Y4O0.29870Minor groove platform2A LSU rRNAG42A43*U434C435C436cWWcWWcSH
16 IL_5J7L_2475J7L0.20180Minor groove platformDA LSU rRNAG43A44*U434C435C436cWWcWWcSH
17 IL_4V8P_2034V8P0.25780Minor groove platformD1 LSU rRNAA1023A1024*U1076U1077U1078cWWcWWntSH
18 IL_5TBW_0395TBW0.22460Minor groove platform1 LSU rRNAA997A998*U1050U1051U1052cWWcWWtSHncSH
19 IL_4V88_4124V880.23040Minor groove platformA6 SSU rRNAU532U533*A518C519A520cWWcWWntSH
20 IL_1Y0Q_0031Y0Q0.22100Minor groove platformAGroup I catalytic intronC192U193*A120C121G122cWWcWWntSH
21 IL_1U6B_0071U6B0.27310Minor groove platformB197-MERC177C178*G128A129G130cWWcWWtSHcSH
22 IL_5J7L_3245J7L0.21101Minor groove platformDA LSU rRNAA2070A2071*U2438C2440U2441cWWcWWcSH
23 IL_4V8P_2544V8P0.25671Minor groove platformD1 LSU rRNAG2407A2408*U2795C2797C2798cWWcWWcSH
24 IL_5TBW_0945TBW0.24411Minor groove platform1 LSU rRNAG2412A2413*U2807C2809C2810cWWcWWcSH
25 IL_4IOA_0764IOA0.24721Minor groove platformX LSU rRNAG2053A2054*U2417C2419C2420cWWcWWcSH
26 IL_4Y4O_2544Y4O0.20451Minor groove platform2A LSU rRNAG2070A2071*U2438C2440C2441cWWcWWcSH
27 IL_4V9F_0754V9F0.22781Minor groove platform0 LSU rRNAG2111A2112*U2473C2475C2476cWWcWWcSH
28 IL_4WF9_0814WF90.24411Minor groove platformX LSU rRNAG2097A2098*U2465C2467C2468cWWcWWcSH
29 IL_4WF9_0324WF90.08410Minor groove platformX LSU rRNAG907A908*U958C959C960cWWcWWcSH
30 IL_4V9F_0344V9F0.00000Minor groove platform0 LSU rRNAG956A957*U1009C1010C1011cWWcWWcSH
31 IL_4Y4O_2054Y4O0.08130Minor groove platform2A LSU rRNAG862A863*U913C914C915cWWcWWcSH
32 IL_4IOA_0274IOA0.15630Minor groove platformX LSU rRNAG875A876*U925C926C927cWWcWWcSH
33 IL_4V5O_1384V5O0.34590Minor groove platformBA SSU rRNAG1150G1151*C1430A1431C1432cWWcWWntSH
34 IL_4LFB_0384LFB0.33520Minor groove platformA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
35 IL_5J7L_0425J7L0.40640Minor groove platformAA SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH
36 IL_5ML7_0095ML70.40710Minor groove platformB23S ribosomal RNAC2201G2202*C2177A2178G2179cWWcWWtSH
37 IL_2QWY_0092QWY0.35110Minor groove platformCSAM-II riboswitchC23A24*U40A41G42cWWcWWtSH
38 IL_5T83_0035T830.31930Minor groove platformAGuanidine-I riboswitchC21G22*C36U37G38cWWcWWntSHncSH
39 IL_3RW6_0013RW60.49951Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAA7A8*U53A55U56cWWcWWncSH
40 IL_5J7L_0645J7L0.57790Single bulged AAA SSU rRNAC1460G1461*U1440A1441G1442cWWcWW
41 IL_2GDI_0032GDI0.35420Minor groove platformXTPP riboswitchA35G36*C23C24U25cWWcWWncSH
42 IL_3K0J_0023K0J0.40810Minor groove platform relatedERNA (87-MER)A35G36*C18C19U20cWWcWWncSH
43 IL_4V8P_2864V8P0.35310Minor groove platformD1 LSU rRNAA3281A3282*U3338C3339U3340cWWcWW
44 IL_3IWN_0013IWN0.48210Minor groove platformAC-di-GMP riboswitchA2C3*G89A90U91cWWncWW
45 IL_4R4V_0074R4V0.50230Minor groove platformAVS ribozyme RNAU607||||7_556G608||||7_556*U777||||7_556U778||||7_556A779||||7_556cWWcWW
46 IL_4R4V_0014R4V0.50230Minor groove platformAVS ribozyme RNAU607G608*U777U778A779cWWcWW
47 IL_4V9F_0324V9F0.72350Single bulged A0 LSU rRNAC1023G1024*U942A943G944cWWcWW
48 IL_4V88_4454V880.59130Minor groove platformA6 SSU rRNAG1178G1179*C1459A1460C1461cWWcWW
49 IL_4Y4O_2094Y4O0.77440Minor groove platform2A LSU rRNAC898A899*U877A878G879cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GG*CAC7
GA*UCC7
GA*UACC6
AG*CAU4
CG*CUG3
AA*UUU2
CA*UAG2
CG*UAG2
AG*CCU2
UG*UUA2
CG*CCGG1
CC*GAAG1
GG*UCAUC1
GG*UCAGC1
UU*ACA1
CU*ACG1
CC*GAG1
AA*UACU1
CG*CAG1
AA*UAAU1
AA*UCU1
AC*GAU1
Non-Watson-Crick part of the motif
SequenceCounts
*A18
*C12
*U7
*AC7
*AA2
*CG1
*CAU1
*CAG1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (45)
  • Single bulged A (2)
  • Minor groove platform related (1)
  • Minor groove platform, major groove intercalation (1)
    • Basepair signature
    cWW-tSH-cWW
    Heat map statistics
    Min 0.05 | Avg 0.51 | Max 0.99
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