IL_06437.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-5	2-3	2-4	3-4
1	IL_4LFB_045	4LFB	0.6777	2	Minor groove platform	A	SSU rRNA	G	1057	G	1058	*	U	1199	G	1202	C	1203	cWW	cWW	tSH
2	IL_5J7L_048	5J7L	0.6380	2	Minor groove platform	AA	SSU rRNA	G	1057	G	1058	*	U	1199	U	1202	C	1203	cWW	cWW	tSH
3	IL_6CZR_116	6CZR	0.6627	0	Minor groove platform	1a	SSU rRNA	A	352	G	353	*	C	55	A	56	U	57	cWW	cWW	ntSH
4	IL_5J7L_004	5J7L	0.6173	0	Minor groove platform	AA	SSU rRNA	A	356	G	357	*	C	54	A	55	U	56	cWW	cWW	tSH
5	IL_4LFB_004	4LFB	0.5951	0	Minor groove platform	A	SSU rRNA	A	356	G	357	*	C	54	A	55	U	56	cWW	cWW	tSH
6	IL_4V88_388	4V88	0.5539	0	Minor groove platform	A6	SSU rRNA	A	428	G	429	*	C	50	A	51	U	52	cWW	cWW	tSH
7	IL_4LFB_054	4LFB	0.5991	0	Minor groove platform	A	SSU rRNA	G	1273	G	1274	*	C	1260	A	1261	C	1262	cWW	ncWW	tSH
8	IL_4UYK_001	4UYK	0.5332	0	Minor groove platform	R	SRP RNA	G	77	G	78	*	C	122	A	123	C	124	cWW		tSH
9	IL_5J7L_314	5J7L	0.7019	1	Minor groove platform, major groove intercalation	DA	LSU rRNA	C	1902	G	1903	*	C	1837	G	1839	G	1840	cWW	cWW	ntSH
10	IL_4Y4O_246	4Y4O	0.4928	1	Minor groove platform	2A	LSU rRNA	C	1893	C	1894	*	G	1846	A	1848	G	1849	cWW	cWW	ncSW
11	IL_4V88_454	4V88	0.4264	0	Minor groove platform	A6	SSU rRNA	C	1317	G	1318	*	C	1306	U	1307	G	1308	cWW	cWW	tSH	cSH
12	IL_5TBW_039	5TBW	0.2246	0	Minor groove platform	1	LSU rRNA	A	997	A	998	*	U	1050	U	1051	U	1052	cWW	cWW	tSH	ncSH
13	IL_4V88_412	4V88	0.2304	0	Minor groove platform	A6	SSU rRNA	U	532	U	533	*	A	518	C	519	A	520	cWW	cWW	ntSH
14	IL_6DLR_003	6DLR	0.2719	0	Minor groove platform	A	Guanidine-I riboswitch	C	21	G	22	*	C	39	U	40	G	41	cWW	cWW	tSH	cSH
15	IL_5T83_003	5T83	0.3193	0	Minor groove platform	A	Guanidine-I riboswitch	C	21	G	22	*	C	36	U	37	G	38	cWW	cWW	ntSH	ncSH
16	IL_2QWY_009	2QWY	0.3511	0	Minor groove platform	C	SAM-II riboswitch	C	23	A	24	*	U	40	A	41	G	42	cWW	cWW	tSH
17	IL_5ML7_009	5ML7	0.4071	0	Minor groove platform	B	23S ribosomal RNA	C	2201	G	2202	*	C	2177	A	2178	G	2179	cWW	cWW	tSH
18	IL_5J7L_042	5J7L	0.4064	0	Minor groove platform	AA	SSU rRNA	G	953	G	954	*	C	1226	A	1227	C	1228	cWW	cWW	ntSH
19	IL_4LFB_038	4LFB	0.3352	0	Minor groove platform	A	SSU rRNA	G	953	G	954	*	C	1226	A	1227	C	1228	cWW	cWW	ntSH
20	IL_6DTD_003	6DTD	0.2578	0	Minor groove platform	C	RNA (37-MER)	U	15	C	16	*	G	22	A	23	A	24	cWW	cWW	tSH	cSH
21	IL_1U6B_007	1U6B	0.2731	0	Minor groove platform	B	197-MER	C	177	C	178	*	G	128	A	129	G	130	cWW	cWW	tSH	cSH
22	IL_5J7L_324	5J7L	0.2110	1	Minor groove platform	DA	LSU rRNA	A	2070	A	2071	*	U	2438	C	2440	U	2441	cWW	cWW		cSH
23	IL_5TBW_094	5TBW	0.2441	1	Minor groove platform	1	LSU rRNA	G	2412	A	2413	*	U	2807	C	2809	C	2810	cWW	cWW		cSH
24	IL_4IOA_076	4IOA	0.2472	1	Minor groove platform	X	LSU rRNA	G	2053	A	2054	*	U	2417	C	2419	C	2420	cWW	cWW		cSH
25	IL_4Y4O_254	4Y4O	0.2045	1	Minor groove platform	2A	LSU rRNA	G	2070	A	2071	*	U	2438	C	2440	C	2441	cWW	cWW		cSH
26	IL_4V9F_075	4V9F	0.2278	1	Minor groove platform	0	LSU rRNA	G	2111	A	2112	*	U	2473	C	2475	C	2476	cWW	cWW		cSH
27	IL_4WF9_081	4WF9	0.2441	1	Minor groove platform	X	LSU rRNA	G	2097	A	2098	*	U	2465	C	2467	C	2468	cWW	cWW		cSH
28	IL_4IOA_027	4IOA	0.1563	0	Minor groove platform	X	LSU rRNA	G	875	A	876	*	U	925	C	926	C	927	cWW	cWW		cSH
29	IL_4WF9_032	4WF9	0.0841	0	Minor groove platform	X	LSU rRNA	G	907	A	908	*	U	958	C	959	C	960	cWW	cWW		cSH
30	IL_4V9F_034	4V9F	0.0000	0	Minor groove platform	0	LSU rRNA	G	956	A	957	*	U	1009	C	1010	C	1011	cWW	cWW		cSH
31	IL_4Y4O_205	4Y4O	0.0813	0	Minor groove platform	2A	LSU rRNA	G	862	A	863	*	U	913	C	914	C	915	cWW	cWW		cSH
32	IL_5J7L_247	5J7L	0.2018	0	Minor groove platform	DA	LSU rRNA	G	43	A	44	*	U	434	C	435	C	436	cWW	cWW		cSH
33	IL_4Y4O_181	4Y4O	0.2987	0	Minor groove platform	2A	LSU rRNA	G	42	A	43	*	U	434	C	435	C	436	cWW	cWW		cSH
34	IL_4IOA_003	4IOA	0.3381	0	Minor groove platform	X	LSU rRNA	G	42	A	43	*	U	447	C	448	C	449	cWW	cWW		cSH
35	IL_3RW6_001	3RW6	0.4995	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	A	7	A	8	*	U	53	A	55	U	56	cWW	cWW		ncSH
36	IL_2GDI_003	2GDI	0.3542	0	Minor groove platform	X	TPP riboswitch	A	35	G	36	*	C	23	C	24	U	25	cWW	cWW		ncSH
37	IL_3K0J_002	3K0J	0.4081	0	Minor groove platform related	E	RNA (87-MER)	A	35	G	36	*	C	18	C	19	U	20	cWW	cWW		ncSH
38	IL_5J7L_064	5J7L	0.5779	0	Single bulged A	AA	SSU rRNA	C	1460	G	1461	*	U	1440	A	1441	G	1442	cWW	cWW
39	IL_3IWN_001	3IWN	0.4821	0	Minor groove platform	A	C-di-GMP riboswitch	A	2	C	3	*	G	89	A	90	U	91	cWW	ncWW
40	IL_4R4V_001	4R4V	0.5023	0	Minor groove platform	A	VS ribozyme RNA	U	607	G	608	*	U	777	U	778	A	779	cWW	cWW
41	IL_4R4V_007	4R4V	0.5023	0	Minor groove platform	A	VS ribozyme RNA	U	607\|\|\|\|7_556	G	608\|\|\|\|7_556	*	U	777\|\|\|\|7_556	U	778\|\|\|\|7_556	A	779\|\|\|\|7_556	cWW	cWW
42	IL_4V9F_032	4V9F	0.7235	0	Single bulged A	0	LSU rRNA	C	1023	G	1024	*	U	942	A	943	G	944	cWW	cWW
43	IL_4V88_445	4V88	0.5913	0	Minor groove platform	A6	SSU rRNA	G	1178	G	1179	*	C	1459	A	1460	C	1461	cWW	cWW
44	IL_4Y4O_209	4Y4O	0.7744	0	Minor groove platform	2A	LSU rRNA	C	898	A	899	*	U	877	A	878	G	879	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GA*UCC	7
GG*CAC	5
GA*UACC	5
AG*CAU	4
CG*CUG	3
CA*UAG	2
AG*CCU	2
CG*UAG	2
UG*UUA	2
GG*UCAGC	1
GG*UCAUC	1
CG*CCGG	1
CC*GAAG	1
AA*UUU	1
UU*ACA	1
CG*CAG	1
UC*GAA	1
CC*GAG	1
AA*UACU	1
AA*UAAU	1
AC*GAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	17
*C	10
*U	6
*AC	6
*AA	2
*CAG	1
*CAU	1
*CG	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_06437.5 Version IL_06437.5 of this group appears in releases 3.18 to 3.24 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_06437.5 Version IL_06437.5 of this group appears in releases 3.18 to 3.24

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Csv

Json