Internal Loop Motif Atlas Release 3.90

#	Motif	Core Nts	Instances
1	IL_44258.2 View exemplar Basepair signature: cWW-cWW-cWW History status: Updated, 2 parents Isolated non-canonical cWW pair (300) Other IL (1)	6	301
2	IL_31462.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged A (121) Major groove intercalation (6)	5	127
3	IL_83039.19 View exemplar Basepair signature: cWW-L-cWW History status: Updated, 1 parent Single bulged U (120) Major groove intercalation (3)	5	123
4	IL_67085.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Updated, 2 parents Tandem non-canonical cWW pairs (54) Isolated cWH basepair with non-canonical cWW (1)	8	55
5	IL_00225.7 View exemplar Basepair signature: cWW-L-cWW History status: Updated, 1 parent Single bulged G (44) Major groove intercalation (2) Stack outside cWW (1)	5	49
6	IL_10167.1 View exemplar Basepair signature: cWW-cHW-cWW History status: New id, > 2 parents Isolated cWH basepair (46) Isolated tWW contact (1) Other IL (1)	6	48
7	IL_18604.1 View exemplar Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW History status: Exact match Minor groove platform (42) Minor groove platform related (2)	5	46
8	IL_48076.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Major groove platform (41)	5	41
9	IL_61258.13 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged C (39) Major groove intercalation (1)	5	40
10	IL_05035.2 View exemplar Basepair signature: cWW-L-cWW History status: Updated, 2 parents Single stack bend (30) Not an internal loop (2) Major groove platform (1)	5	38
11	IL_09705.12 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (32) Double sheared; A in syn (3)	8	35
12	IL_82107.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (28) Major groove intercalation (6)	4	34
13	IL_70923.5 View exemplar Basepair signature: cWW-cWW-tSS-tSH-tHS-cWW-tHS History status: Exact match Kink-turn (32)	12	32
14	IL_50694.4 View exemplar Basepair signature: cWW-cWW-tSH-cWW-R History status: Exact match Major groove platform; stack outside cWW (28)	6	28
15	IL_66635.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Stack outside cWW (10) Major groove intercalation (10) Multiple bulged bases (3)	5	23
16	IL_68140.1 View exemplar Basepair signature: cWW-cSH-cWW History status: Exact match Major groove minor groove platform; mini C-loop (18) Major groove intercalation (1)	6	19
17	IL_17136.4 View exemplar Basepair signature: cWW-R-L-tHS-tHW-cWW History status: Exact match tSH-tHW-tHS (15) UAA/GAN related (2) UAA/GAN variation (1)	10	18
18	IL_63959.1 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove platform with extra cWW (11) Major groove minor groove platform with extra cWW (7)	7	18
19	IL_95716.2 View exemplar Basepair signature: cWW-cWW-tHS-tHS-tSH-cWW History status: Exact match Triple sheared (18)	10	18
20	IL_76004.2 View exemplar Basepair signature: cWW-L-R-cWW History status: Updated, 2 parents Isolated non-canonical cWW contact (8) Isolated near basepair (6) Isolated non-canonical cWW pair (4)	6	18
21	IL_49751.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW-cWW History status: Exact match Triple non-canonical cWW pairs (12) Partly complementary (5)	10	17
22	IL_48779.2 View exemplar Basepair signature: cWW-L-cWW History status: Updated, 1 parent Major groove platform (11) Major groove intercalation (5)	5	16
23	IL_45067.5 View exemplar Basepair signature: cWW-tSH-tSS-tHS-R-cWW-cWW-R History status: Exact match Kink-turn (10) Kink-turn with non-sequential stacking (6)	12	16
24	IL_54650.3 View exemplar Basepair signature: cWW-cWW-cWW History status: Updated, 1 parent Isolated non-canonical cWW with bulges (11) Isolated non-canonical cWW pair (1)	6	16
25	IL_24807.2 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (9)	4	16
26	IL_36174.1 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (14)	8	15
27	IL_89002.4 View exemplar Basepair signature: cWW-tWH-cWW-L-cWW-tHS History status: Exact match UAA/GAN (15)	9	15
28	IL_63596.9 View exemplar Basepair signature: cWW-cWS-cHS-L-cWW-tWH History status: Exact match C-loop (15)	7	15
29	IL_31531.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Decoding loop related (10)	7	15
30	IL_04346.8 View exemplar Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (15)	15	15
31	IL_45612.6 View exemplar Basepair signature: cWW-cWW-L-R-cWW-L History status: Exact match	8	14
32	IL_65585.1 View exemplar Basepair signature: cWW-L-R-tSH-tHS-cWW History status: Exact match Double sheared with non-canonical cWW (8) Triple sheared (1) Other IL (1) Double sheared with near cWW (1)	10	13
33	IL_88739.5 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Minor groove platform, major groove intercalation (4) Minor groove platform (4) Major groove intercalation (1)	5	12
34	IL_69229.2 View exemplar Basepair signature: cWW-tHS-tSH-tSS-cWW-cWW-cWW-L History status: Exact match Kink-turn (11)	12	11
35	IL_12554.2 View exemplar Basepair signature: cWW-cWW-cWW-cWW History status: Exact match Isolated non-canonical cWW pair (10)	6	11
36	IL_68541.1 View exemplar Basepair signature: cWW-L-cWW History status: New id, > 2 parents Single stack bend (4) Single stack bend with SAM intercalation (2) 90 degree turn (2) Other IL (1) Single base bend (1)	5	11
37	IL_53448.1 View exemplar Basepair signature: cWW-tWH-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (11)	8	11
38	IL_41203.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-cSH History status: Exact match SSU/LSU pseudoknot (10)	10	10
39	IL_13404.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R History status: Exact match Tandem non-canonical cWW pairs (9)	8	10
40	IL_64231.2 View exemplar Basepair signature: cWW-cWW-cWW-L-cWW-R History status: Exact match Minor groove platform related (3) Tandem non-canonical cWW pairs (2) Decoding loop related (1) UAA/GAN related (1) Multiple bulged bases with non-canonical cWW (1)	9	10
41	IL_73554.3 View exemplar Basepair signature: cWW-cWS-cWW History status: Updated, 2 parents Isolated cWS basepair (5) Isolated non-canonical cWW pair (2)	6	10
42	IL_30342.2 View exemplar Basepair signature: cWW-L-R-cWW History status: Updated, 2 parents Other IL (3) Decoding loop related (1) Decoding loop with one bulged A (1)	6	10
43	IL_62742.2 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Updated, 2 parents Tandem non-canonical cWW pairs (4)	7	10
44	IL_25360.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (6)	4	10
45	IL_22551.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match Bulged stacked bases (5) Multiple bulged bases (1)	6	9
46	IL_15698.1 View exemplar Basepair signature: cWW-tSH-cSH-cWW History status: Exact match Major groove platform with extra pair (5) Other IL (1)	7	9
47	IL_95601.6 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Major groove platform with intercalation (6) Minor groove platform (1)	5	9
48	IL_38958.10 View exemplar Basepair signature: cWW-cWW-cWW-tHS History status: Exact match Isolated tHS basepair with bulges (6)	6	9
49	IL_58103.9 View exemplar Basepair signature: cWW-cSH-cWS-tSW-L-R-cWW-R History status: Exact match Symmetric double minor groove platform (6)	10	9
50	IL_76042.3 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin; G-bulge (6) Sarcin-Ricin target in LSU H95; G-bulge (1)	13	9
51	IL_59096.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Stack and bulge (2) Intercalated cWW (2) Decoding loop related (1)	5	8
52	IL_07235.3 View exemplar Basepair signature: cWW-tSH-L-tHS-cWW History status: Exact match UAA/GAN variation (6)	9	8
53	IL_31461.2 View exemplar Basepair signature: cWW-cWS-tWH-cWW-L History status: Updated, 1 parent C-loop (7)	7	8
54	IL_67701.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	8
55	IL_67767.1 View exemplar Basepair signature: cWW-tWH-cWW-cSH-cWW History status: Exact match Receptor of 11-nt loop-receptor motif (8)	9	8
56	IL_77691.3 View exemplar Basepair signature: cWW-tSH-tHS-L-cWW History status: Exact match UAA/GAN related (5) UAA/GAN variation (1)	9	8
57	IL_15052.2 View exemplar Basepair signature: cWW-cWW-cWW-R History status: Exact match Minor groove platform (7)	6	8
58	IL_54997.8 View exemplar Basepair signature: cWW-tWW-cWW History status: Exact match Isolated tWW turn (5)	6	8
59	IL_17470.7 View exemplar Basepair signature: cWW-tWW-L-R-tWH-L-cWW History status: Exact match tHW-tHW cross-strand stack (5)	11	7
60	IL_63450.5 View exemplar Basepair signature: cWW-cHS-cWW-cWW-cWW History status: Exact match Major groove platform with extra pair (2)	7	7
61	IL_71241.2 View exemplar Basepair signature: cWW-cWW-tSH-cWW-L-L History status: Exact match Isolated tHS basepair with bulges (4)	8	7
62	IL_56455.5 View exemplar Basepair signature: cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW History status: Exact match Bacterial 5S Loop E (7)	18	7
63	IL_65969.4 View exemplar Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW History status: Exact match tSH-tSH-tHH-tHS (5)	12	7
64	IL_93341.4 View exemplar Basepair signature: cWW-L-R-cSH-cSH-cWW History status: Updated, 1 parent 8-nt loop receptor (3)	8	7
65	IL_66414.7 View exemplar Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW History status: Exact match Triple sheared with non-canonical cWW (7)	14	7
66	IL_82488.1 View exemplar Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW History status: Exact match Triple sheared related (1)	12	7
67	IL_06455.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match Intercalated tWH (5)	9	7
68	IL_25186.2 View exemplar Basepair signature: cWW-L-R-L-R-cWW-cWW History status: Exact match	10	7
69	IL_60992.7 View exemplar Basepair signature: cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L History status: Exact match	16	6
70	IL_36516.1 View exemplar Basepair signature: cWW-cWW-cSH-cWW-L History status: New id, 2 parents 8-nt loop receptor (2) Other IL (1)	8	6
71	IL_25872.2 View exemplar Basepair signature: cWW-cWW-cWH-cWW History status: Updated, 1 parent	8	6
72	IL_36872.1 View exemplar Basepair signature: cWW-L-cWW-cSH History status: Exact match Major groove platform with intercalated tWH (5)	6	6
73	IL_22854.2 View exemplar Basepair signature: cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L History status: Exact match	14	6
74	IL_47078.2 View exemplar Basepair signature: cWW-cWS-L-cWW-L History status: Exact match Minor groove platform (5)	7	6
75	IL_89021.1 View exemplar Basepair signature: cWW-L-R-L-R-tHS-cWW History status: Exact match UAA/GAN (3) UAA/GAN with extra stack (2)	10	6
76	IL_02509.3 View exemplar Basepair signature: cWW-cWS-cWW-cWW-R-cSH-tWH-R History status: Exact match C-loop (3) C-loop with bulged stacked A's (2)	9	6
77	IL_51265.3 View exemplar Basepair signature: cWW-tSS-tHS-tSH-cWW-L History status: Exact match Kink-turn from U4 (5) Kink-turn from T-box riboswitch (1)	10	6
78	IL_06136.2 View exemplar Basepair signature: cWW-tHS-cWW-tHS-tSH-tSH-cWW History status: Exact match Quadruple sheared (4) Triple sheared with non-canonical cWW (1)	12	6
79	IL_21200.1 View exemplar Basepair signature: cWW-tSH-tHW-L-cWW-L History status: Exact match tSH-tHW (5)	10	6
80	IL_49767.7 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match UAA/GAN with extra cWW (5)	11	6
81	IL_66798.1 View exemplar Basepair signature: cWW-L-R-L-R-tHS-cWW History status: Exact match AAA cross-strand stack (4) Triple sheared (1)	10	6
82	IL_90538.5 View exemplar Basepair signature: cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L History status: Exact match Kink-turn (6)	13	6
83	IL_58579.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match Minor groove platform with extra cWW (3)	7	6
84	IL_90991.8 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (4)	4	6
85	IL_99646.1 View exemplar Basepair signature: cWW-tWH-tHS-cWW History status: Exact match tSH-tHW (3) Other IL (1)	8	6
86	IL_04638.2 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cSH-cWW-L History status: Exact match tSH-tHS-tHW (3)	13	5
87	IL_50458.1 View exemplar Basepair signature: cWW-cWW-L-R-L-cWW History status: Exact match	9	5
88	IL_65510.2 View exemplar Basepair signature: cWW-cWW-L-cWW-L-R-R History status: Exact match	9	5
89	IL_38186.3 View exemplar Basepair signature: cWW-L-cWW-R-L-R History status: Exact match	8	5
90	IL_31007.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match Tandem non-canonical cWW pairs with near WC pairs (1)	12	5
91	IL_07195.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Decoding loop related (3)	5	5
92	IL_97255.1 View exemplar Basepair signature: cWW-tSH-L-cWW-L History status: Exact match Isolated basepair with bulged bases (3) Minor groove platform with extra cWW (1)	8	5
93	IL_41756.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW-L History status: Exact match 8x6 Sarcin-Ricin with inserted Y; G-bulge (5)	14	5
94	IL_65718.1 View exemplar Basepair signature: cWW-cSH-cWS-cWW-cWW History status: Exact match	9	5
95	IL_38862.3 View exemplar Basepair signature: cWW-cSH-R-tWH-tHS-cWW History status: Exact match 5x5 Sarcin-Ricin with intercalated A; G-bulge (3) tSH-tHW-tHS (2)	10	5
96	IL_26598.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R History status: Exact match	10	5
97	IL_57188.4 View exemplar Basepair signature: cWW-cSH-tWW-L-tWW-cWW-cSH History status: Exact match Kink-turn related (5)	11	5
98	IL_92446.2 View exemplar Basepair signature: cWW-cWW-R-L-L History status: Exact match	7	5
99	IL_54177.1 View exemplar Basepair signature: cWW-cSW-tWH-L-R-L-R-tHS-cWW History status: Exact match Kink-turn related (5)	13	5
100	IL_66080.1 View exemplar Basepair signature: cWW-cWW-tSH-L-cWW-L History status: Exact match	13	5
101	IL_16386.3 View exemplar Basepair signature: cWW-L-cWW History status: Updated, 2 parents Intercalated cWS (1)	5	5
102	IL_16458.3 View exemplar Basepair signature: cWW-cHS-tWH-cWW-R-L-cWW-tHS-L-R History status: Exact match Sarcin-Ricin target in LSU H95; G-bulge (4) 7x6 Sarcin-Ricin; G-bulge (1)	13	5
103	IL_54678.7 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match Major groove platform with intercalation (1)	4	5
104	IL_61438.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	5	5
105	IL_90170.1 View exemplar Basepair signature: cWW-L-R-L-cWW-cWW History status: New id, 2 parents Non canonical cWW and near pair (1)	9	5
106	IL_93525.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match Multiple bulged bases (1) Bulged stacked bases (1)	6	5
107	IL_12566.3 View exemplar Basepair signature: cWW-L-tHS-L-cWW-L History status: Exact match	9	5
108	IL_17069.4 View exemplar Basepair signature: cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW History status: Exact match Kink-turn related (4)	13	5
109	IL_93830.3 View exemplar Basepair signature: cWW-cWW-L-R-cSH-R-tWH-tHS-cWW History status: Exact match 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)	14	4
110	IL_80604.3 View exemplar Basepair signature: cWW-cWW-tWH-tWH-tHW-L-R-cWW History status: Exact match tWH-tWH-tHW-tHW (3)	14	4
111	IL_69145.3 View exemplar Basepair signature: cWW-L-cWW-L-R-L-R-R History status: Exact match Pseudoknot (3)	10	4
112	IL_76319.2 View exemplar Basepair signature: cWW-L-cWS-cWW History status: Exact match Isolated cWS basepair (2)	7	4
113	IL_83162.8 View exemplar Basepair signature: cWW-cWW-tSH-cWW-tHH-L History status: Exact match tHS double platform (1)	10	4
114	IL_04650.2 View exemplar Basepair signature: cWW-cWW-L-cWW-L-R-L-L-cSH History status: Exact match	11	4
115	IL_19724.3 View exemplar Basepair signature: cWW-cWW-L-cWW-L History status: Exact match	7	4
116	IL_80823.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match Major groove minor groove platform with extra cWW (2)	8	4
117	IL_50715.2 View exemplar Basepair signature: cWW-tSH-tHH-L-R-L-R-cSH-tWW-cWW-L-L-L-R-L History status: Exact match	21	4
118	IL_65653.1 View exemplar Basepair signature: cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L History status: Exact match	16	4
119	IL_47074.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match	6	4
120	IL_55953.3 View exemplar Basepair signature: cWW-tSH-tHS-R-L-L-R-cWW History status: Exact match	12	4
121	IL_91888.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Multiple bulged bases (2) Other IL (1)	5	4
122	IL_29346.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match Left turn (3)	7	4
123	IL_36940.3 View exemplar Basepair signature: cWW-tSH-tWW-cWW History status: Updated, 1 parent tSH-tHW (1)	8	4
124	IL_97697.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match Reverse turn (4)	11	4
125	IL_74386.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Single bulged A (1) Stack outside cWW (1)	5	4
126	IL_18471.2 View exemplar Basepair signature: cWW-cSH-cWW-cWW History status: Exact match Major groove platform with extra cWW (2)	7	4
127	IL_14592.1 View exemplar Basepair signature: cWW-tHH-cWW-L-L History status: Exact match Major groove minor groove platform with tHH (3) C-loop (1)	7	4
128	IL_08296.4 View exemplar Basepair signature: cWW-L-tHS-L-cWW History status: Exact match UAA/GAN related, with intercalation (3)	8	4
129	IL_68506.1 View exemplar Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW History status: Exact match	17	4
130	IL_88269.3 View exemplar Basepair signature: cWW-L-R-cSH-tWH-tHS-cWW History status: Exact match 6x5 Sarcin-Ricin; G-bulge (3) tSH-tHW-tWW (1)	11	4
131	IL_16976.1 View exemplar Basepair signature: cWW-cWW History status: Exact match Multiple bulged bases (3) Other IL (1)	4	4
132	IL_48444.3 View exemplar Basepair signature: cWW-L-R-cWW-cWW History status: Updated, 2 parents	8	4
133	IL_37842.2 View exemplar Basepair signature: cWW-cWW-L-R-cWW-cWW-R-L History status: Exact match Triple sheared related (2)	11	4
134	IL_96332.1 View exemplar Basepair signature: cWW-cWW-L-R-L-cWW-L History status: Exact match Tandem non-canonical cWW pairs (2)	10	4
135	IL_09990.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	4
136	IL_76308.5 View exemplar Basepair signature: cWW-tSH-tHW-tHS-cWW-cWW History status: Exact match tSH-tHW-tHS-cWW (4)	12	4
137	IL_27393.8 View exemplar Basepair signature: cWW-cWW-L-cWW-L-R-L-R History status: Exact match	10	3
138	IL_35728.2 View exemplar Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW History status: Exact match 9x8 Sarcin-Ricin; G-bulge (1) tSH-tHW-tHH-tHS (1)	16	3
139	IL_78349.2 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-R-L-cWW-L History status: Exact match	14	3
140	IL_74051.1 View exemplar Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L History status: Exact match Kink-turn (3)	11	3
141	IL_28026.2 View exemplar Basepair signature: cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW History status: Exact match	14	3
142	IL_58960.1 View exemplar Basepair signature: cWW-L-cWW-L-tWW-L-R-L History status: Exact match	11	3
143	IL_02349.4 View exemplar Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with bulged A; G-bulge (3)	13	3
144	IL_19897.2 View exemplar Basepair signature: cWW-L-cWW-L-L-tWH-R-L History status: Exact match	11	3
145	IL_94910.1 View exemplar Basepair signature: cWW-tSS-tSH-L-R-R-L-cWW-L History status: Exact match Kink-turn (3)	12	3
146	IL_05192.2 View exemplar Basepair signature: cWW-cWW-cWW-L-R-R-L-L-R History status: Exact match	10	3
147	IL_71294.2 View exemplar Basepair signature: cWW-L-R-tHW-L-R-cWW-cWW History status: Updated, 2 parents tSH-tHW-tHS-cWW (1) Double sheared; A in syn; two near cWW pairs (1)	12	3
148	IL_79529.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	3
149	IL_87284.1 View exemplar Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW History status: Exact match tSH-tHW-tWH-tHS (3)	12	3
150	IL_81522.2 View exemplar Basepair signature: cWW-L-L-cWW History status: Exact match Major groove minor groove platform with intercalation; mini C-loop (2)	6	3
151	IL_03350.1 View exemplar Basepair signature: cWW-tWH-cWW-L-L-cWW-L-L-L History status: Exact match Reverse kink-turn related (3)	13	3
152	IL_49460.3 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L History status: Exact match	11	3
153	IL_69440.2 View exemplar Basepair signature: cWW-L-R-cSH-cWW History status: Exact match	8	3
154	IL_14177.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	3
155	IL_36973.8 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-R-cWW-cWW History status: Updated, 1 parent	14	3
156	IL_24134.1 View exemplar Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-L History status: Exact match Kink-turn (3)	12	3
157	IL_47298.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	3
158	IL_61299.2 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Updated, 1 parent Isolated basepair with bulged bases (1)	9	3
159	IL_75283.2 View exemplar Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R History status: Exact match	18	3
160	IL_04332.2 View exemplar Basepair signature: cWW-cWW-L-cWW-L-R-L-R-L-L History status: Exact match	12	3
161	IL_11344.1 View exemplar Basepair signature: cWW-cSS-L-R-cWW History status: Exact match 180 degree turn (3)	6	3
162	IL_26728.2 View exemplar Basepair signature: cWW-cSH-R-cSH-cWW-cWW History status: Exact match	9	3
163	IL_69496.1 View exemplar Basepair signature: cWW-cWW-tSH-tHS-L-cWW History status: Exact match	11	3
164	IL_09129.1 View exemplar Basepair signature: cWW-tWH-tWH-L-R-L-R-tWW-cWW History status: Exact match	14	3
165	IL_39137.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match Single stack bend (2) Other IL (1)	6	3
166	IL_82426.4 View exemplar Basepair signature: cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R History status: Exact match Part of G-quadruplex (3)	14	3
167	IL_26785.1 View exemplar Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW History status: Exact match 10x8 Sarcin-Ricin; G-bulge (3)	18	3
168	IL_34739.3 View exemplar Basepair signature: cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R History status: Exact match	20	3
169	IL_60154.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match	7	3
170	IL_32056.1 View exemplar Basepair signature: cWW-L-cWW-L-L-tWH-R-L-R-L History status: Exact match	13	3
171	IL_04395.1 View exemplar Basepair signature: cWW-cWS-tWH-cWW-L History status: Exact match C-loop (3)	7	3
172	IL_58112.1 View exemplar Basepair signature: cWW-cWW-tWW-cWW History status: Exact match tWW and non-canonical cWW (1) Tandem non-canonical cWW pairs (1) Non canonical cWW and near pair (1)	8	3
173	IL_64858.1 View exemplar Basepair signature: cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW History status: Exact match G-quadruplex (3)	22	3
174	IL_45735.2 View exemplar Basepair signature: cWW-tSH-cWW-R-L-tHH-L-cWW History status: Exact match tHS double platform (2)	11	3
175	IL_60192.2 View exemplar Basepair signature: cWW-tSH-tSH-tSS-tHS-L-R-cWW History status: Exact match Kink-turn (2)	12	3
176	IL_96303.1 View exemplar Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-R History status: Exact match	13	3
177	IL_64900.1 View exemplar Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L History status: Exact match Kink-turn (3)	14	3
178	IL_70627.3 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: Exact match UAA/GAN related (2) UAA/GAN (1)	10	3
179	IL_68574.3 View exemplar Basepair signature: cWW-tHH-tHS-cWW History status: Exact match	8	3
180	IL_19668.1 View exemplar Basepair signature: cWW-cWW-L-cWW-L History status: Exact match Isolated non-canonical cWW pair (2)	8	2
181	IL_06691.1 View exemplar Basepair signature: cWW-cWS-L-R-L-R-cWW-L History status: Exact match	11	2
182	IL_15174.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-cSS-cWW-L History status: Exact match	13	2
183	IL_22339.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match tWW and near cWH (1)	8	2
184	IL_30730.1 View exemplar Basepair signature: cWW-cSH-L-R-L-cWW-L-R History status: Exact match	10	2
185	IL_53581.1 View exemplar Basepair signature: cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW History status: Exact match Kink-turn related (2)	22	2
186	IL_88701.1 View exemplar Basepair signature: cWW-L-R-cWW-cWW History status: Exact match Tandem non-canonical cWW pairs (1) Other IL (1)	8	2
187	IL_33323.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match	9	2
188	IL_91592.1 View exemplar Basepair signature: cWW-L-tHH-L-cWW-L-L History status: Exact match	10	2
189	IL_15218.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L History status: Exact match	13	2
190	IL_38394.1 View exemplar Basepair signature: cWW-tWH-cWW-L-L-R-L History status: Exact match Stack outside cWW (1)	10	2
191	IL_53749.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L History status: Exact match	9	2
192	IL_67474.6 View exemplar Basepair signature: cWW-cWW-L-cWW History status: Exact match 180 degree turn (2)	6	2
193	IL_74114.1 View exemplar Basepair signature: cWW-cWS-cWW-L-R History status: Exact match	8	2
194	IL_10207.3 View exemplar Basepair signature: cWW-cWW-L-cSW-L-R-L-cWW-R-cWW History status: Exact match Minor groove platform related (2)	13	2
195	IL_41344.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	2
196	IL_76458.1 View exemplar Basepair signature: cWW-cSH-L-cWW History status: Exact match Minor groove platform (1)	6	2
197	IL_84251.1 View exemplar Basepair signature: cWW-L-tHS-cWW History status: Exact match	8	2
198	IL_44624.1 View exemplar Basepair signature: cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L History status: Exact match	14	2
199	IL_85724.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R History status: Exact match	8	2
200	IL_38634.5 View exemplar Basepair signature: cWW-cWH-L-R-cWW History status: Exact match cWH basepair and non-canonical AC (2)	8	2
201	IL_53762.1 View exemplar Basepair signature: cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L History status: Exact match	24	2
202	IL_74125.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match	6	2
203	IL_80884.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-L History status: Exact match	10	2
204	IL_10389.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW History status: Exact match Isolated non-canonical cWW pair (1)	8	2
205	IL_49093.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match Other IL (1)	9	2
206	IL_69271.1 View exemplar Basepair signature: cWW-cWW-L-R-L-cWW-L-L-R History status: Exact match	12	2
207	IL_84365.1 View exemplar Basepair signature: cWW-L-cHW-L-cWW-L History status: Exact match cWH basepair with bulged bases (1)	9	2
208	IL_28976.1 View exemplar Basepair signature: cWW-L-cWW-cSH-R-cWW History status: Exact match	10	2
209	IL_51005.1 View exemplar Basepair signature: cWW-L-R-tWH-cWW-L-L History status: Exact match	9	2
210	IL_87034.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match	7	2
211	IL_10447.1 View exemplar Basepair signature: cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW History status: Exact match	17	2
212	IL_26564.1 View exemplar Basepair signature: cWW-L-R-tWH-L-R-L-R-L-cWW History status: Exact match	13	2
213	IL_33711.1 View exemplar Basepair signature: cWW-cSH-cWW-L-L-R-L History status: Exact match Minor groove platform (2)	9	2
214	IL_69313.1 View exemplar Basepair signature: cWW-tWH-tHH-tHS-cWW History status: Exact match	10	2
215	IL_44998.1 View exemplar Basepair signature: cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R History status: Exact match	25	2
216	IL_65851.3 View exemplar Basepair signature: cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L History status: Exact match tSH-tHW-tHS with extra cWW pairs (1)	14	2
217	IL_07703.1 View exemplar Basepair signature: cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW History status: Exact match	15	2
218	IL_74284.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-cWW History status: Exact match	10	2
219	IL_10484.1 View exemplar Basepair signature: cWW-tSH-tHS-cWW History status: Exact match Double sheared (2)	8	2
220	IL_18354.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R History status: Exact match	12	2
221	IL_42032.1 View exemplar Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L History status: Exact match	11	2
222	IL_64048.1 View exemplar Basepair signature: cWW-L-cWW-L-L-tWH-R-L-R History status: Exact match	12	2
223	IL_77092.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L History status: Exact match 180 degree turn (2)	10	2
224	IL_84428.1 View exemplar Basepair signature: cWW-cWW-L-cWW-L History status: Exact match Isolated non-canonical cWW pair (1)	8	2
225	IL_59302.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match	9	2
226	IL_07880.1 View exemplar Basepair signature: cWW-cSS-L-tWH-tHW-cWW-cWW History status: Exact match Kink-turn related (1)	11	2
227	IL_33886.1 View exemplar Basepair signature: cWW-L-cWW-L-R-L-R-cWW History status: Exact match Kink-turn with embedded cWW pair (2)	11	2
228	IL_42230.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match 180 degree turn (1)	7	2
229	IL_21173.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L History status: Exact match	11	2
230	IL_45444.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	10	2
231	IL_73452.1 View exemplar Basepair signature: cWW-cWW-R-L-cWW-R-cWW-L-R History status: Exact match	5	2
232	IL_67877.2 View exemplar Basepair signature: cWW-cHW-cWW-cWW-R-L History status: Exact match	7	2
233	IL_89984.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	2
234	IL_18472.3 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match	11	2
235	IL_34470.3 View exemplar Basepair signature: cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L History status: Exact match 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)	17	2
236	IL_58032.1 View exemplar Basepair signature: cWW-tWH-cWW-L-L-R History status: Exact match Major groove platform; stack outside cWW (1)	9	2
237	IL_64509.1 View exemplar Basepair signature: cWW-tWW-tWW-tSS-L-cWW History status: Exact match Kink-turn related (1)	11	2
238	IL_77761.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match	9	2
239	IL_59877.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match 180 degree turn (1)	5	2
240	IL_80231.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-tHS-cWW History status: Exact match Triple sheared related (1) Other IL (1)	11	2
241	IL_87517.1 View exemplar Basepair signature: cWW-L-R-L-R-tHS-L-cWW History status: Exact match	11	2
242	IL_11347.3 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Updated, 1 parent	8	2
243	IL_84902.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-cHH History status: Exact match SSU/LSU pseudoknot (2)	10	2
244	IL_22046.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L History status: Exact match Other IL (1)	9	2
245	IL_37722.1 View exemplar Basepair signature: cWW-L-tSH-L-tHW-tHS-R-cWW-L History status: Exact match Kink-turn (1)	14	2
246	IL_45699.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	9	2
247	IL_53064.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L History status: Exact match	16	2
248	IL_48431.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	9	2
249	IL_77870.1 View exemplar Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW History status: Exact match	13	2
250	IL_93571.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	15	2
251	IL_39753.2 View exemplar Basepair signature: cWW-L-R-tWH-L-R-L-R-L-cWW History status: Exact match	13	2
252	IL_27086.1 View exemplar Basepair signature: cWW-tWW-L-tWW-cWW-L History status: Exact match	10	2
253	IL_34822.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	12	2
254	IL_77881.1 View exemplar Basepair signature: cWW-tSH-tHS-L-R-cWW History status: Exact match Triple sheared (2)	10	2
255	IL_22281.1 View exemplar Basepair signature: cWW-L-R-tWW-tHS-cWW History status: Exact match	10	2
256	IL_30542.5 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	9	2
257	IL_66997.2 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Updated, 1 parent	8	2
258	IL_74024.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-cWW History status: Exact match	14	2
259	IL_88613.1 View exemplar Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW History status: Exact match 8x7 Sarcin-Ricin; G-bulge (1)	15	2
260	IL_62898.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	2
261	IL_12750.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	15	1
262	IL_44438.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	12	1
263	IL_58809.1 View exemplar Basepair signature: cWW-tSS-L-R-L-R-L-R-L-cWW-L-L-R-L-R-L-L-R History status: Exact match Kink-turn related (1)	19	1
264	IL_70670.1 View exemplar Basepair signature: cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L History status: Exact match 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
265	IL_85630.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L History status: Exact match	15	1
266	IL_46112.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L History status: Exact match	9	1
267	IL_60657.1 View exemplar Basepair signature: cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R History status: Exact match	16	1
268	IL_96371.1 View exemplar Basepair signature: cWW-tHH-cWW History status: Exact match	6	1
269	IL_01176.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match	11	1
270	IL_25412.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match Major groove intercalation (1)	7	1
271	IL_55620.1 View exemplar Basepair signature: cWW-L-tHS-L-R-cWW-L History status: New id, 1 parent	10	1
272	IL_62984.1 View exemplar Basepair signature: cWW-tHS-tWH-cWH-cWW-L-L-cWW History status: Exact match	13	1
273	IL_13244.1 View exemplar Basepair signature: cWW-tSH-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	32	1
274	IL_44519.1 View exemplar Basepair signature: cWW-R-L-L-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	24	1
275	IL_70801.1 View exemplar Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW History status: Exact match	13	1
276	IL_78472.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L History status: Exact match	13	1
277	IL_85652.1 View exemplar Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L History status: Exact match	12	1
278	IL_93889.1 View exemplar Basepair signature: cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L History status: Exact match	21	1
279	IL_07171.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match Bulged stacked bases (1)	6	1
280	IL_46461.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L-L-L-R-L-R-tSW-R-R-L-R-L-R-L-R History status: Exact match	28	1
281	IL_97218.1 View exemplar Basepair signature: cWW-L-R-L-cSH-L-L-R-L-R-L-R-L-R-L-cWW-L-L History status: Exact match	21	1
282	IL_02203.1 View exemplar Basepair signature: cWW-cSW-cWW-cWW History status: Exact match	8	1
283	IL_25573.1 View exemplar Basepair signature: cWW-tSW-L-cWW-L-L History status: Exact match	8	1
284	IL_33557.1 View exemplar Basepair signature: cWW-tHH-R-L-R-L-L-R-L-R-cWW History status: Exact match Kink-turn related (1)	14	1
285	IL_48802.1 View exemplar Basepair signature: cWW-R-L-R-L-R-L-R-L-L-L-L-R History status: Exact match	14	1
286	IL_55917.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R History status: Exact match	8	1
287	IL_91636.1 View exemplar Basepair signature: cWW-tSH-L-R-L-cWW-L-L History status: Exact match	11	1
288	IL_04736.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match	12	1
289	IL_13394.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	21	1
290	IL_19852.1 View exemplar Basepair signature: cWW-tWH-cWW-cWH-cWH-cWH History status: Exact match Part of G-quadruplex (1)	11	1
291	IL_28564.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: Exact match	7	1
292	IL_59027.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match Kink-turn related (1)	9	1
293	IL_78866.1 View exemplar Basepair signature: cWW-cWW-L-R-L-cWW History status: Exact match Decoding loop related (1)	9	1
294	IL_94351.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tHS-cWW History status: Exact match	11	1
295	IL_15484.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-cSH History status: Exact match	14	1
296	IL_22821.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match Pseudoknot (1)	17	1
297	IL_31084.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L History status: Exact match	12	1
298	IL_61242.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-cWW History status: Exact match	10	1
299	IL_67623.1 View exemplar Basepair signature: cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW History status: Exact match Minor groove platform related (1)	14	1
300	IL_17765.1 View exemplar Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L History status: Exact match	14	1
301	IL_33623.1 View exemplar Basepair signature: cWW-L-tHH-L-R-L-cWW-L-R History status: Exact match	12	1
302	IL_76460.1 View exemplar Basepair signature: cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R History status: Exact match	22	1
303	IL_44874.1 View exemplar Basepair signature: cWW-tSH-tHW-L-cWW-L-L History status: Exact match tSH-tHW (1)	11	1
304	IL_79147.1 View exemplar Basepair signature: cWW-L-R-L-R-tWH-L-R-L-cWW-L History status: Exact match	14	1
305	IL_53787.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L-R History status: Exact match Pseudoknot (1)	14	1
306	IL_61249.1 View exemplar Basepair signature: cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW History status: Exact match	20	1
307	IL_74184.1 View exemplar Basepair signature: cWW-L-tHS-L-cWW-L-L-L History status: Exact match	11	1
308	IL_81392.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	13	1
309	IL_97631.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tHS-cWW History status: Exact match Triple sheared related (1)	11	1
310	IL_18200.1 View exemplar Basepair signature: cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW History status: Exact match	16	1
311	IL_41853.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L History status: Exact match	13	1
312	IL_49384.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW History status: Exact match	16	1
313	IL_77045.1 View exemplar Basepair signature: cWW-L-tSW-L-tHW-cWW-L History status: Exact match Kink-turn (1)	11	1
314	IL_84409.1 View exemplar Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L History status: Exact match	23	1
315	IL_91920.1 View exemplar Basepair signature: cWW-cWW-tHH-cWW History status: Exact match	8	1
316	IL_13874.1 View exemplar Basepair signature: cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW History status: Exact match	12	1
317	IL_20245.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L History status: Exact match	18	1
318	IL_51191.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match	9	1
319	IL_59258.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW History status: Exact match	12	1
320	IL_95459.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L-R-L-R-L-R History status: Exact match Other IL (1)	18	1
321	IL_16073.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-L-L-R History status: Exact match	12	1
322	IL_23152.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R-L-R-L History status: Exact match	11	1
323	IL_38882.1 View exemplar Basepair signature: cWW-L-R-tSS-R-L-tSH-R-L-cWW-R-L-R-L-cWW History status: Exact match	18	1
324	IL_47108.1 View exemplar Basepair signature: cWW-L-R-L-tHH-L-cWW History status: Exact match	9	1
325	IL_54050.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match	11	1
326	IL_89127.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW History status: Exact match Other IL (1)	12	1
327	IL_33817.1 View exemplar Basepair signature: cWW-R-L-L-L History status: Exact match	6	1
328	IL_06029.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L History status: Exact match Kink-turn (1)	17	1
329	IL_20463.1 View exemplar Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R History status: Exact match 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)	18	1
330	IL_29357.1 View exemplar Basepair signature: cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R History status: Exact match	18	1
331	IL_72838.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cHW-L-R-L-R-L-R-L-R-tWW-R-L-R-L-R-L-cWW-cWW-R-R-L-R-R-L-R-L-R-L-R History status: New id, no parents	40	1
332	IL_79846.1 View exemplar Basepair signature: cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L History status: Exact match	19	1
333	IL_87290.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L History status: Exact match Kink-turn related (1)	15	1
334	IL_16253.1 View exemplar Basepair signature: cWW-R-L-R-L-L-L History status: Exact match	8	1
335	IL_31504.1 View exemplar Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L History status: Exact match	18	1
336	IL_61286.1 View exemplar Basepair signature: cWW-L-R-L-R-L-tWH-L-tHS-cWW History status: Exact match 8x6 Sarcin-Ricin with inserted A; G-bulge (1)	14	1
337	IL_67780.1 View exemplar Basepair signature: cWW-cSH-L-R-L-L-R-L History status: Exact match	10	1
338	IL_81731.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L History status: Exact match	17	1
339	IL_89312.1 View exemplar Basepair signature: cWW-tSH-L-cWS-cWW-L History status: New id, 1 parent	10	1
340	IL_98347.1 View exemplar Basepair signature: cWW-L-R-L-cWW History status: New id, no parents	7	1
341	IL_04105.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R History status: Exact match	16	1
342	IL_10796.1 View exemplar Basepair signature: cWW-L-R-cWW History status: Exact match	6	1
343	IL_26685.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match Multiple bulged bases (1)	6	1
344	IL_49714.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match Major groove intercalation (1)	7	1
345	IL_57881.1 View exemplar Basepair signature: cWW-L-cWW History status: Exact match Multiple bulged bases (1)	5	1
346	IL_69447.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	17	1
347	IL_84665.1 View exemplar Basepair signature: cWW-L-cSW-cWW-L-L-R-L-R-L-R-L History status: Exact match	15	1
348	IL_93094.1 View exemplar Basepair signature: cWW-L-tHH-L-tHS-L-cWW History status: Exact match Reverse kink-turn (1)	11	1
349	IL_06083.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L History status: Exact match	11	1
350	IL_29471.1 View exemplar Basepair signature: cWW-cWW-L-tHS-L-cWW History status: Exact match	10	1
351	IL_37015.1 View exemplar Basepair signature: cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L History status: Exact match	13	1
352	IL_51287.1 View exemplar Basepair signature: cWW-tSS-L-R-L-R-L-R-L-cWW-L-R-L-R-tHH-R-L-R-L-R-R-L-R-L-R-R-L-L-R-L-cWW History status: Exact match	35	1
353	IL_59724.1 View exemplar Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW History status: Exact match 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)	15	1
354	IL_80209.1 View exemplar Basepair signature: cWW-cHW-L-cWW-L-L-R-L-R-L History status: Exact match	13	1
355	IL_87495.1 View exemplar Basepair signature: cWW-R-L-R-L-L-L History status: Exact match	8	1
356	IL_24254.1 View exemplar Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW History status: Exact match 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)	13	1
357	IL_38969.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match Reverse kink-turn related (1)	9	1
358	IL_47972.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match	8	1
359	IL_98803.1 View exemplar Basepair signature: cWW-L-R-L-tHS-cWW History status: Exact match	9	1
360	IL_42778.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match	11	1
361	IL_84860.1 View exemplar Basepair signature: cWW-tHW-tHS-cWW-cWW History status: Exact match	10	1
362	IL_14882.1 View exemplar Basepair signature: cWW-tSH-L-cWW-L-L-R-L History status: Exact match	11	1
363	IL_29826.1 View exemplar Basepair signature: cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW History status: Exact match	25	1
364	IL_37379.1 View exemplar Basepair signature: cWW-L-cWW-L-L History status: Exact match	7	1
365	IL_52743.1 View exemplar Basepair signature: cWW-tSW-L-cSW-L-cWW-L History status: Exact match	10	1
366	IL_95811.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-L-R-L History status: Exact match Vitamin B12 Aptamer (1)	11	1
367	IL_24499.1 View exemplar Basepair signature: cWW-cWS-L-R-L-R-cWW-L-cSH-L History status: Exact match	12	1
368	IL_31558.1 View exemplar Basepair signature: cWW-L-tHS-L-R-cWW History status: Exact match	9	1
369	IL_75942.1 View exemplar Basepair signature: cWW-L-cWW-L History status: Exact match	6	1
370	IL_99095.1 View exemplar Basepair signature: cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW History status: Exact match	16	1
371	IL_43140.1 View exemplar Basepair signature: cWW-L-cWW-cWH-L-L History status: Exact match	9	1
372	IL_64842.1 View exemplar Basepair signature: cWW-L-tWH-L-cWW-L-cSH History status: Exact match	10	1
373	IL_69986.1 View exemplar Basepair signature: cWW-cHW-L-R-L-R-cWH-cWW History status: Exact match	12	1
374	IL_77827.1 View exemplar Basepair signature: cWW-tSS-R-L-L-R-L-cWW-tHH-L-R-L-R-L-R-L-R-L-R-L-cSH-R-R-L-R-L-R-cWW-R-cWW-R-L-R-L-R-L-R-R History status: Exact match	45	1
375	IL_06300.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW History status: Exact match	9	1
376	IL_14945.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L History status: Exact match	16	1
377	IL_73700.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-cWW-tHS-cWW History status: Exact match	13	1
378	IL_80287.1 View exemplar Basepair signature: cWW-tSH-tHH-L-tHS-cWW History status: Exact match	11	1
379	IL_88072.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R-L History status: Exact match	13	1
380	IL_96236.1 View exemplar Basepair signature: cWW-tWW-cWW-L-cWW History status: New id, no parents	9	1
381	IL_09570.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R History status: Exact match	12	1
382	IL_16665.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-cWW History status: Exact match	11	1
383	IL_39287.1 View exemplar Basepair signature: cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L History status: Exact match Kink-turn related (1)	15	1
384	IL_54737.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R History status: Exact match	20	1
385	IL_62654.1 View exemplar Basepair signature: cWW-tSH-tHH-tHS-cWW History status: Exact match tSH-tHH-tHS (1)	10	1
386	IL_90346.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L History status: Exact match	9	1
387	IL_99396.1 View exemplar Basepair signature: cWW-R-L-R-L-cHW-L-R-L-R-L-R-L-R-tWW-R-L-R-L-R-L-L-cWW-R-R-L-R-R-L-R-L-R-L-R History status: Exact match	38	1
388	IL_19048.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW History status: Exact match	14	1
389	IL_26921.1 View exemplar Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW History status: Exact match tWH-tWH-tHW-tHW (1)	12	1
390	IL_34780.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW History status: Exact match Kink-turn (1)	16	1
391	IL_49867.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-tHW-R-L-L-cWW History status: Exact match	15	1
392	IL_70096.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match Kink-turn related (1)	7	1
393	IL_85222.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match	11	1
394	IL_22252.1 View exemplar Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L History status: Exact match Kink-turn related (1)	16	1
395	IL_30441.1 View exemplar Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R History status: Exact match	14	1
396	IL_37752.1 View exemplar Basepair signature: cWW-L-R-L-R-tHW-R-L-cWW History status: Exact match	12	1
397	IL_53366.1 View exemplar Basepair signature: cWW-cWW-tWH-L-tHS-cWW History status: Exact match	6	1
398	IL_73759.1 View exemplar Basepair signature: cWW-cSH-tHS-cWH-cHW-cWW History status: Exact match Part of G-quadruplex (1)	9	1
399	IL_80398.1 View exemplar Basepair signature: cWW-L-cSW-L-R-cWW History status: Exact match Minor groove platform (1)	8	1
400	IL_00559.1 View exemplar Basepair signature: cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L History status: Exact match	18	1
401	IL_32357.1 View exemplar Basepair signature: cWW-L-cWW-cWW History status: Exact match	7	1
402	IL_54896.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R History status: Exact match	12	1
403	IL_83023.1 View exemplar Basepair signature: cWW-R-L-R-L-R-L-L-L-L History status: Exact match	11	1
404	IL_99498.1 View exemplar Basepair signature: cWW-L-R-tHW-cWW History status: Exact match	8	1
405	IL_04600.1 View exemplar Basepair signature: cWW-cWW-L-R-L-R-L-R-cWW-cWW History status: Exact match	14	1
406	IL_19516.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R History status: Exact match Pseudoknot (1)	18	1
407	IL_44325.1 View exemplar Basepair signature: cWW-cWH-cWW-L History status: Exact match	6	1
408	IL_49971.1 View exemplar Basepair signature: cWW-cWH-cWW-cWW-L-L-R History status: Exact match	10	1
409	IL_85615.1 View exemplar Basepair signature: cWW-L-cWW-L-L-R History status: Exact match	8	1
410	IL_93585.1 View exemplar Basepair signature: cWW-L-cWW-L-cWW-tWH-L-cSH-L History status: Exact match Kink-turn related (1)	11	1
411	IL_06463.1 View exemplar Basepair signature: cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW History status: Exact match	15	1
412	IL_15107.1 View exemplar Basepair signature: cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW History status: Exact match	18	1
413	IL_45896.1 View exemplar Basepair signature: cWW-cWW-cWW History status: Exact match	11	1
414	IL_60448.1 View exemplar Basepair signature: cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R History status: Exact match	20	1
415	IL_80412.1 View exemplar Basepair signature: cWW-tSW-L-cWW-L-L-R-L History status: Exact match	11	1
416	IL_01038.1 View exemplar Basepair signature: cWW-tWH-L-R-tHS-cWW History status: Exact match UAA/GAN with extra stack (1)	10	1
417	IL_33141.1 View exemplar Basepair signature: cWW-L-R-L-R-L-cWW-L-L History status: Exact match	11	1
418	IL_40144.1 View exemplar Basepair signature: cWW-L-R-L-cWW-L History status: Exact match Minor groove platform (1)	8	1
419	IL_48600.1 View exemplar Basepair signature: cWW-L-cWW-cWW-R-L-tHS-cWW History status: Exact match	13	1

Coloring options:
Nucleotide numbers

Updated, 1 parent 12; Exact match 388; Updated, 2 parents 10; New id, > 2 parents 2; New id, 2 parents 2; New id, 1 parent 2; New id, no parents 3;

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