Motif IL_07039.2 Version IL_07039.2 of this group appears in releases 3.93 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8DP3_001 | 8DP3 | 0.6758 | 1 | Major groove platform | R | RNA (90-MER) | C | 48 | U | 49 | G | 51 | * | C | 78 | G | 79 | cWW | cWW | ||
| 2 | IL_5J7L_393 | 5J7L | 0.4350 | 0 | Major groove platform | DA | LSU rRNA | PSU | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | cWW | ntSH | cWW | |
| 3 | IL_5J7L_394 | 5J7L | 0.3559 | 0 | Major groove platform | DA | LSU rRNA | PSU | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW | |
| 4 | IL_4V9F_083 | 4V9F | 0.1982 | 0 | Major groove platform | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW | |
| 5 | IL_8P9A_331 | 8P9A | 0.2389 | 0 | Major groove platform (H) | AR | LSU rRNA | U | 2826 | U | 2827 | G | 2828 | * | U | 2862 | G | 2863 | cWW | cWW | ||
| 6 | IL_7A0S_088 | 7A0S | 0.1659 | 0 | Major groove platform | X | LSU rRNA | U | 2559 | G | 2560 | G | 2561 | * | C | 2486 | G | 2487 | cWW | chH | cWW | |
| 7 | IL_9DFE_096 | 9DFE | 0.1325 | 0 | Major groove platform (H) | 1A | LSU rRNA | U | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW | |
| 8 | IL_4WF9_094 | 4WF9 | 0.0971 | 0 | Major groove platform | X | LSU rRNA | U | 2607 | G | 2608 | G | 2609 | * | C | 2534 | G | 2535 | cWW | chH | cWW | |
| 9 | IL_4V9F_086 | 4V9F | 0.0000 | 0 | Major groove platform | 0 | LSU rRNA | U | 2615 | G | 2616 | G | 2617 | * | C | 2542 | G | 2543 | cWW | nchH | cWW | |
| 10 | IL_8P9A_334 | 8P9A | 0.0925 | 0 | Major groove platform (H) | AR | LSU rRNA | U | 2949 | G | 2950 | G | 2951 | * | C | 2876 | G | 2877 | cWW | cWW | ||
| 11 | IL_5XTM_004 | 5XTM | 0.4414 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 44 | G | 45 | cWW | cWW | ||
| 12 | IL_5DCV_005 | 5DCV | 0.5076 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 48 | G | 49 | cWW | cWW | ||
| 13 | IL_5VCI_004 | 5VCI | 0.5369 | 0 | Major groove intercalation | B+A | RNA (12-mer) | U | 2 | A | 3 | U | 4 | * | A | 11 | G | 12 | cWW | cWW | ||
| 14 | IL_4PCJ_004 | 4PCJ | 0.5706 | 0 | Major groove intercalation | A | trCUG-3('5) | U | 25 | A | 26 | U | 27 | * | A | 11 | G | 12 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*CG | 5 |
| UAU*AG | 4 |
| CUAG*CG | 1 |
| (PSU)GA*UG | 1 |
| (PSU)GG*CG | 1 |
| UCG*UG | 1 |
| UUG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 7 |
| A* | 4 |
| UA* | 1 |
| C* | 1 |
| U* | 1 |
- Annotations
-
- Major groove platform (7)
- Major groove intercalation (4)
- Major groove platform (H) (3)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.39 | Max 0.76
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