#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-32-43-4
1 IL_8DP3_0018DP30.67581Major groove platformREnterovirus 5' cloverleaf cis-acting replication elementC48U49G51*C78G79cWWcWW
2 IL_5J7L_3935J7L0.43500Major groove platformDA LSU rRNAPSU2457G2458A2459*U2493G2494cWWntSHcWW
3 IL_5J7L_3945J7L0.35590Major groove platformDA LSU rRNAPSU2580G2581G2582*C2507G2508cWWchHcWW
4 IL_4V9F_0834V9F0.19820Major groove platform0 LSU rRNAU2492C2493G2494*U2528G2529cWWcHHcWW
5 IL_8P9A_3318P9A0.23890Major groove platform (H)AR LSU rRNAU2826U2827G2828*U2862G2863cWWcWW
6 IL_7A0S_0887A0S0.16590Major groove platformX LSU rRNAU2559G2560G2561*C2486G2487cWWchHcWW
7 IL_9DFE_0969DFE0.13250Major groove platform (H)1A LSU rRNAU2580G2581G2582*C2507G2508cWWchHcWW
8 IL_4WF9_0944WF90.09710Major groove platformX LSU rRNAU2607G2608G2609*C2534G2535cWWchHcWW
9 IL_4V9F_0864V9F0.00000Major groove platform0 LSU rRNAU2615G2616G2617*C2542G2543cWWnchHcWW
10 IL_8P9A_3348P9A0.09250Major groove platform (H)AR LSU rRNAU2949G2950G2951*C2876G2877cWWcWW
11 IL_5XTM_0045XTM0.44140Major groove intercalationDRNA (47-MER)U3A4U5*A44G45cWWcWW
12 IL_5DCV_0055DCV0.50760Major groove intercalationDRNA (47-MER)U3A4U5*A48G49cWWcWW
13 IL_5VCI_0045VCI0.53690Major groove intercalationB+ARNA (12-mer)U2A3U4*A11G12cWWcWW
14 IL_4PCJ_0044PCJ0.57060Major groove intercalationAtrCUG-3('5)U25A26U27*A11G12cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGG*CG5
UAU*AG4
CUAG*CG1
(PSU)GA*UG1
(PSU)GG*CG1
UCG*UG1
UUG*UG1
Non-Watson-Crick part of the motif
SequenceCounts
G*7
A*4
UA*1
C*1
U*1

Release history

Release3.933.94
Date2025-01-292025-02-26
StatusUpdated, 2 parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (7)
  • Major groove intercalation (4)
  • Major groove platform (H) (3)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.06 | Avg 0.39 | Max 0.76
    Help

    Coloring options:

    IL_8DP3_001:IL_8DP3_001 = 0IL_8DP3_001:IL_5J7L_393 = 0.4355IL_8DP3_001:IL_5J7L_394 = 0.4634IL_8DP3_001:IL_4V9F_083 = 0.5978IL_8DP3_001:IL_8P9A_331 = 0.628IL_8DP3_001:IL_7A0S_088 = 0.6519IL_8DP3_001:IL_9DFE_096 = 0.6603IL_8DP3_001:IL_4WF9_094 = 0.6847IL_8DP3_001:IL_4V9F_086 = 0.6758IL_8DP3_001:IL_8P9A_334 = 0.7087IL_8DP3_001:IL_5XTM_004 = 0.7132IL_8DP3_001:IL_5DCV_005 = 0.7592IL_8DP3_001:IL_5VCI_004 = 0.6546IL_8DP3_001:IL_4PCJ_004 = 0.6767IL_5J7L_393:IL_8DP3_001 = 0.4355IL_5J7L_393:IL_5J7L_393 = 0IL_5J7L_393:IL_5J7L_394 = 0.2901IL_5J7L_393:IL_4V9F_083 = 0.4049IL_5J7L_393:IL_8P9A_331 = 0.3883IL_5J7L_393:IL_7A0S_088 = 0.38IL_5J7L_393:IL_9DFE_096 = 0.4106IL_5J7L_393:IL_4WF9_094 = 0.427IL_5J7L_393:IL_4V9F_086 = 0.435IL_5J7L_393:IL_8P9A_334 = 0.4539IL_5J7L_393:IL_5XTM_004 = 0.5789IL_5J7L_393:IL_5DCV_005 = 0.6483IL_5J7L_393:IL_5VCI_004 = 0.6019IL_5J7L_393:IL_4PCJ_004 = 0.6305IL_5J7L_394:IL_8DP3_001 = 0.4634IL_5J7L_394:IL_5J7L_393 = 0.2901IL_5J7L_394:IL_5J7L_394 = 0IL_5J7L_394:IL_4V9F_083 = 0.3476IL_5J7L_394:IL_8P9A_331 = 0.388IL_5J7L_394:IL_7A0S_088 = 0.3832IL_5J7L_394:IL_9DFE_096 = 0.3732IL_5J7L_394:IL_4WF9_094 = 0.3717IL_5J7L_394:IL_4V9F_086 = 0.3559IL_5J7L_394:IL_8P9A_334 = 0.3985IL_5J7L_394:IL_5XTM_004 = 0.4603IL_5J7L_394:IL_5DCV_005 = 0.5074IL_5J7L_394:IL_5VCI_004 = 0.4457IL_5J7L_394:IL_4PCJ_004 = 0.4744IL_4V9F_083:IL_8DP3_001 = 0.5978IL_4V9F_083:IL_5J7L_393 = 0.4049IL_4V9F_083:IL_5J7L_394 = 0.3476IL_4V9F_083:IL_4V9F_083 = 0IL_4V9F_083:IL_8P9A_331 = 0.1117IL_4V9F_083:IL_7A0S_088 = 0.1809IL_4V9F_083:IL_9DFE_096 = 0.1417IL_4V9F_083:IL_4WF9_094 = 0.2092IL_4V9F_083:IL_4V9F_086 = 0.1982IL_4V9F_083:IL_8P9A_334 = 0.2223IL_4V9F_083:IL_5XTM_004 = 0.4263IL_4V9F_083:IL_5DCV_005 = 0.5253IL_4V9F_083:IL_5VCI_004 = 0.5325IL_4V9F_083:IL_4PCJ_004 = 0.5662IL_8P9A_331:IL_8DP3_001 = 0.628IL_8P9A_331:IL_5J7L_393 = 0.3883IL_8P9A_331:IL_5J7L_394 = 0.388IL_8P9A_331:IL_4V9F_083 = 0.1117IL_8P9A_331:IL_8P9A_331 = 0IL_8P9A_331:IL_7A0S_088 = 0.1676IL_8P9A_331:IL_9DFE_096 = 0.1516IL_8P9A_331:IL_4WF9_094 = 0.2314IL_8P9A_331:IL_4V9F_086 = 0.2389IL_8P9A_331:IL_8P9A_334 = 0.2446IL_8P9A_331:IL_5XTM_004 = 0.4609IL_8P9A_331:IL_5DCV_005 = 0.5623IL_8P9A_331:IL_5VCI_004 = 0.5759IL_8P9A_331:IL_4PCJ_004 = 0.6053IL_7A0S_088:IL_8DP3_001 = 0.6519IL_7A0S_088:IL_5J7L_393 = 0.38IL_7A0S_088:IL_5J7L_394 = 0.3832IL_7A0S_088:IL_4V9F_083 = 0.1809IL_7A0S_088:IL_8P9A_331 = 0.1676IL_7A0S_088:IL_7A0S_088 = 0IL_7A0S_088:IL_9DFE_096 = 0.1061IL_7A0S_088:IL_4WF9_094 = 0.1566IL_7A0S_088:IL_4V9F_086 = 0.1659IL_7A0S_088:IL_8P9A_334 = 0.1729IL_7A0S_088:IL_5XTM_004 = 0.4833IL_7A0S_088:IL_5DCV_005 = 0.5685IL_7A0S_088:IL_5VCI_004 = 0.6032IL_7A0S_088:IL_4PCJ_004 = 0.6359IL_9DFE_096:IL_8DP3_001 = 0.6603IL_9DFE_096:IL_5J7L_393 = 0.4106IL_9DFE_096:IL_5J7L_394 = 0.3732IL_9DFE_096:IL_4V9F_083 = 0.1417IL_9DFE_096:IL_8P9A_331 = 0.1516IL_9DFE_096:IL_7A0S_088 = 0.1061IL_9DFE_096:IL_9DFE_096 = 0IL_9DFE_096:IL_4WF9_094 = 0.1301IL_9DFE_096:IL_4V9F_086 = 0.1325IL_9DFE_096:IL_8P9A_334 = 0.1611IL_9DFE_096:IL_5XTM_004 = 0.4652IL_9DFE_096:IL_5DCV_005 = 0.5551IL_9DFE_096:IL_5VCI_004 = 0.5793IL_9DFE_096:IL_4PCJ_004 = 0.6115IL_4WF9_094:IL_8DP3_001 = 0.6847IL_4WF9_094:IL_5J7L_393 = 0.427IL_4WF9_094:IL_5J7L_394 = 0.3717IL_4WF9_094:IL_4V9F_083 = 0.2092IL_4WF9_094:IL_8P9A_331 = 0.2314IL_4WF9_094:IL_7A0S_088 = 0.1566IL_4WF9_094:IL_9DFE_096 = 0.1301IL_4WF9_094:IL_4WF9_094 = 0IL_4WF9_094:IL_4V9F_086 = 0.0971IL_4WF9_094:IL_8P9A_334 = 0.0986IL_4WF9_094:IL_5XTM_004 = 0.4524IL_4WF9_094:IL_5DCV_005 = 0.5318IL_4WF9_094:IL_5VCI_004 = 0.5613IL_4WF9_094:IL_4PCJ_004 = 0.594IL_4V9F_086:IL_8DP3_001 = 0.6758IL_4V9F_086:IL_5J7L_393 = 0.435IL_4V9F_086:IL_5J7L_394 = 0.3559IL_4V9F_086:IL_4V9F_083 = 0.1982IL_4V9F_086:IL_8P9A_331 = 0.2389IL_4V9F_086:IL_7A0S_088 = 0.1659IL_4V9F_086:IL_9DFE_096 = 0.1325IL_4V9F_086:IL_4WF9_094 = 0.0971IL_4V9F_086:IL_4V9F_086 = 0IL_4V9F_086:IL_8P9A_334 = 0.0925IL_4V9F_086:IL_5XTM_004 = 0.4414IL_4V9F_086:IL_5DCV_005 = 0.5076IL_4V9F_086:IL_5VCI_004 = 0.5369IL_4V9F_086:IL_4PCJ_004 = 0.5706IL_8P9A_334:IL_8DP3_001 = 0.7087IL_8P9A_334:IL_5J7L_393 = 0.4539IL_8P9A_334:IL_5J7L_394 = 0.3985IL_8P9A_334:IL_4V9F_083 = 0.2223IL_8P9A_334:IL_8P9A_331 = 0.2446IL_8P9A_334:IL_7A0S_088 = 0.1729IL_8P9A_334:IL_9DFE_096 = 0.1611IL_8P9A_334:IL_4WF9_094 = 0.0986IL_8P9A_334:IL_4V9F_086 = 0.0925IL_8P9A_334:IL_8P9A_334 = 0IL_8P9A_334:IL_5XTM_004 = 0.4302IL_8P9A_334:IL_5DCV_005 = 0.5053IL_8P9A_334:IL_5VCI_004 = 0.5462IL_8P9A_334:IL_4PCJ_004 = 0.5791IL_5XTM_004:IL_8DP3_001 = 0.7132IL_5XTM_004:IL_5J7L_393 = 0.5789IL_5XTM_004:IL_5J7L_394 = 0.4603IL_5XTM_004:IL_4V9F_083 = 0.4263IL_5XTM_004:IL_8P9A_331 = 0.4609IL_5XTM_004:IL_7A0S_088 = 0.4833IL_5XTM_004:IL_9DFE_096 = 0.4652IL_5XTM_004:IL_4WF9_094 = 0.4524IL_5XTM_004:IL_4V9F_086 = 0.4414IL_5XTM_004:IL_8P9A_334 = 0.4302IL_5XTM_004:IL_5XTM_004 = 0IL_5XTM_004:IL_5DCV_005 = 0.1758IL_5XTM_004:IL_5VCI_004 = 0.2313IL_5XTM_004:IL_4PCJ_004 = 0.254IL_5DCV_005:IL_8DP3_001 = 0.7592IL_5DCV_005:IL_5J7L_393 = 0.6483IL_5DCV_005:IL_5J7L_394 = 0.5074IL_5DCV_005:IL_4V9F_083 = 0.5253IL_5DCV_005:IL_8P9A_331 = 0.5623IL_5DCV_005:IL_7A0S_088 = 0.5685IL_5DCV_005:IL_9DFE_096 = 0.5551IL_5DCV_005:IL_4WF9_094 = 0.5318IL_5DCV_005:IL_4V9F_086 = 0.5076IL_5DCV_005:IL_8P9A_334 = 0.5053IL_5DCV_005:IL_5XTM_004 = 0.1758IL_5DCV_005:IL_5DCV_005 = 0IL_5DCV_005:IL_5VCI_004 = 0.1917IL_5DCV_005:IL_4PCJ_004 = 0.2123IL_5VCI_004:IL_8DP3_001 = 0.6546IL_5VCI_004:IL_5J7L_393 = 0.6019IL_5VCI_004:IL_5J7L_394 = 0.4457IL_5VCI_004:IL_4V9F_083 = 0.5325IL_5VCI_004:IL_8P9A_331 = 0.5759IL_5VCI_004:IL_7A0S_088 = 0.6032IL_5VCI_004:IL_9DFE_096 = 0.5793IL_5VCI_004:IL_4WF9_094 = 0.5613IL_5VCI_004:IL_4V9F_086 = 0.5369IL_5VCI_004:IL_8P9A_334 = 0.5462IL_5VCI_004:IL_5XTM_004 = 0.2313IL_5VCI_004:IL_5DCV_005 = 0.1917IL_5VCI_004:IL_5VCI_004 = 0IL_5VCI_004:IL_4PCJ_004 = 0.0603IL_4PCJ_004:IL_8DP3_001 = 0.6767IL_4PCJ_004:IL_5J7L_393 = 0.6305IL_4PCJ_004:IL_5J7L_394 = 0.4744IL_4PCJ_004:IL_4V9F_083 = 0.5662IL_4PCJ_004:IL_8P9A_331 = 0.6053IL_4PCJ_004:IL_7A0S_088 = 0.6359IL_4PCJ_004:IL_9DFE_096 = 0.6115IL_4PCJ_004:IL_4WF9_094 = 0.594IL_4PCJ_004:IL_4V9F_086 = 0.5706IL_4PCJ_004:IL_8P9A_334 = 0.5791IL_4PCJ_004:IL_5XTM_004 = 0.254IL_4PCJ_004:IL_5DCV_005 = 0.2123IL_4PCJ_004:IL_5VCI_004 = 0.0603IL_4PCJ_004:IL_4PCJ_004 = 0IL_8DP3_001IL_5J7L_393IL_5J7L_394IL_4V9F_083IL_8P9A_331IL_7A0S_088IL_9DFE_096IL_4WF9_094IL_4V9F_086IL_8P9A_334IL_5XTM_004IL_5DCV_005IL_5VCI_004IL_4PCJ_004Discrepancy0.000.200.400.60
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