Motif IL_07527.1 Version IL_07527.1 of this group appears in releases 3.3 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_004 | 1U6B | 0.8771 | 0 | B | 197-MER | G | 119 | A | 120 | A | 121 | G | 122 | * | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | cWW | cWW | cWW | |||
| 2 | IL_5TBW_065 | 5TBW | 0.4942 | 1 | Multiple bulged bases with near cWW | 1 | LSU rRNA | G | 1623 | G | 1624 | A | 1625 | U | 1626 | * | G | 1817 | U | 1818 | U | 1819 | U | 1820 | C | 1822 | cWW | ncWW | ncWW | cWW | |
| 3 | IL_1J2B_001 | 1J2B | 0.0000 | 0 | C | tRNA(Val) | C | 926 | G | 927 | C | 928 | C | 929 | * | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | cWW | cWW | ||||
| 4 | IL_1MFQ_001 | 1MFQ | 0.8216 | 0 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAAGC | 1 |
| GGAU*GUUUUC | 1 |
| CGCC*GGAGG | 1 |
| UAAG*CAGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AAG | 1 |
| GA*UUUU | 1 |
| GC*GAG | 1 |
| AA*AGU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Multiple bulged bases with near cWW (1)
- Basepair signature
- cWW-L-R-R-cWW-cWW
- Heat map statistics
- Min 0.49 | Avg 0.63 | Max 0.98
Coloring options: