Motif IL_07931.2 Version IL_07931.2 of this group appears in releases 3.18 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR6_002 | 4KR6 | 0.5816 | 8 | D | RNA (39-MER) | U | 8 | U | 16 | G | 18 | * | C | 25 | A | 26 | A | 27 | G | 28 | cWW | ncWW | cWW | |
| 2 | IL_4V84_070 | 4V84 | 0.0000 | 0 | AV | RNA (34-MER) | C | 6194 | G | 6195 | A | 6196 | * | U | 6180 | C | 6181 | A | 6182 | G | 6183 | cWW | ncWW | cWW | |
| 3 | IL_6CZR_136 | 6CZR | 0.7040 | 0 | 1a | SSU rRNA | C | 627 | G | 628 | C | 629 | * | G | 578 | G | 579 | C | 580 | G | 581 | cWW | ntHS | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUGUCCUUG*CAAG | 1 |
| CGA*UCAG | 1 |
| CGC*GGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGUCCUU*AA | 1 |
| G*CA | 1 |
| G*GC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-cWW
- Heat map statistics
- Min 0.58 | Avg 0.49 | Max 0.93
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