Motif IL_09348.5 Version IL_09348.5 of this group appears in releases 1.1 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NUV_002 | 1NUV | 0.0000 | 1 | C+D | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 2 | IL_2QBG_108 | 2QBG | 0.7595 | 0 | B | 23S rRNA | C | 2870 | U | 2871 | A | 2872 | A | 2873 | C | 2874 | * | G | 2843 | G | 2844 | U | 2845 | G | 2846 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 1 |
| CUAAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 1 |
| UAA*GU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09348.5 | Only in the parent motif |
|---|---|---|---|
| IL_09348.4 Compare | IL_1NUV_002, IL_2QBG_108 | IL_4A1B_070 |
Children motifs
| Child motif | Common motif instances | Only in IL_09348.5 | Only in the child motif |
|---|---|---|---|
| IL_09348.6 Compare | IL_1NUV_002, IL_2QBG_108 | IL_4A1B_070 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.76 | Avg 0.38 | Max 0.76
Coloring options: