Motif IL_09530.1 Version IL_09530.1 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LCK_005 | 4LCK | 0.8622 | 8 | C | T-BOX RIBOSWITCH STEM I | A | 36 | U | 37 | G | 38 | C | 47 | * | G | 69 | G | 70 | A | 71 | U | 72 | cWW | ncWW | cHW | cWW | |
| 2 | IL_3D2V_003 | 3D2V | 0.1164 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | ntWS | cWW |
| 3 | IL_2GDI_008 | 2GDI | 0.0000 | 2 | Y | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | ntWS | cWW | |
| 4 | IL_2GDI_004 | 2GDI | 0.0799 | 2 | cWH basepair and non-canonical AC | X | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | ntWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUC*GCGUA | 2 |
| AUGAUUAGCGAC*GGAU | 1 |
| UGAAC*GCGCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAU*CGU | 2 |
| UGAUUAGCGA*GA | 1 |
| GAA*CGC | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09530.1 | Only in the parent motif |
|---|---|---|---|
| IL_78732.3 Compare | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003 | IL_4LCK_005 | IL_3BNP_003, IL_3BNP_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_09530.1 | Only in the child motif |
|---|---|---|---|
| IL_09530.2 Compare | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005 | IL_3BNP_003 |
- Annotations
-
- cWH basepair and non-canonical AC (2)
- Basepair signature
- cWW-cWH-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.37 | Max 0.90
Coloring options: