Motif IL_78732.3 Version IL_78732.3 of this group appears in releases 0.7 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3D2V_003 | 3D2V | 0.1164 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW |
| 2 | IL_2GDI_008 | 2GDI | 0.0000 | 2 | Y | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW | |
| 3 | IL_2GDI_004 | 2GDI | 0.0799 | 2 | cWH basepair and non-canonical AC | X | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW |
| 4 | IL_3BNP_003 | 3BNP | 0.8329 | 1 | B+A | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 14 | C | 15 | A | 16 | G | 18 | cWW | cWW | ||
| 5 | IL_3BNP_002 | 3BNP | 0.8973 | 1 | A+B | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 13 | C | 14 | A | 15 | G | 17 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUC*GCGUA | 2 |
| CACC*GCAAG | 2 |
| UGAAC*GCGCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAU*CGU | 2 |
| AC*CAA | 2 |
| GAA*CGC | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_78732.3 | Only in the parent motif |
|---|---|---|---|
| IL_78732.2 Compare | IL_2GDI_004, IL_3BNP_003, IL_3BNP_002, IL_2GDI_008, IL_3D2V_003 | IL_3D2V_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_78732.3 | Only in the child motif |
|---|---|---|---|
| IL_09530.1 Compare | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003 | IL_3BNP_003, IL_3BNP_002 | IL_4LCK_005 |
| IL_05684.1 Compare | IL_3BNP_003, IL_3BNP_002 | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003 | IL_2QBG_057, IL_3V2F_043, IL_3BNQ_005 |
- Annotations
-
- cWH basepair and non-canonical AC (2)
- Basepair signature
- cWW-cWH-tWS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.47 | Max 0.96
Coloring options: