#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_4LCK_0054LCK0.86228CT-BOX RIBOSWITCH STEM IA36U37G38C47*G69G70A71U72cWWncWWncHWcWW
2 IL_3D2V_0033D2V0.11642cWH basepair and non-canonical ACATPP riboswitch (THI element)U47G48A49C51*G64C65G66A68cWWcWHcWW
3 IL_2GDI_0082GDI0.00002YTPP riboswitchU59G60A61C63*G76C77G78A80cWWcWHcWW
4 IL_2GDI_0042GDI0.07992cWH basepair and non-canonical ACXTPP riboswitchU59G60A61C63*G76C77G78A80cWWcWHcWW
5 IL_3BNP_0033BNP0.83291B+AA site of human mitochondrial ribosome, B chainC5A6C7C8*G14C15A16G18cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAUC*GCGUA2
AUGAUUAGCGAC*GGAU1
UGAAC*GCGCA1
CACC*GCAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAU*CGU2
UGAUUAGCGA*GA1
GAA*CGC1
AC*CAA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_09530.2Only in the child motif
IL_09530.3
Compare
IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005IL_3BNP_003
IL_55114.2
Compare
IL_3BNP_003IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005IL_4CUX_062, IL_3BNP_002, IL_2QBG_057, IL_4NVV_045, IL_3BNQ_005
Annotations
  • (3)
  • cWH basepair and non-canonical AC (2)
  • Basepair signature
    cWW-cWH-L-R-cWW
    Heat map statistics
    Min 0.08 | Avg 0.52 | Max 1.03
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