Motif IL_09530.2 Version IL_09530.2 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4LCK_005 | 4LCK | 0.8622 | 8 | C | T-BOX RIBOSWITCH STEM I | A | 36 | U | 37 | G | 38 | C | 47 | * | G | 69 | G | 70 | A | 71 | U | 72 | cWW | ncWW | ncHW | cWW | |
2 | IL_3D2V_003 | 3D2V | 0.1164 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW | |
3 | IL_2GDI_008 | 2GDI | 0.0000 | 2 | Y | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW | ||
4 | IL_2GDI_004 | 2GDI | 0.0799 | 2 | cWH basepair and non-canonical AC | X | TPP riboswitch | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW | |
5 | IL_3BNP_003 | 3BNP | 0.8329 | 1 | B+A | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 14 | C | 15 | A | 16 | G | 18 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAUC*GCGUA | 2 |
AUGAUUAGCGAC*GGAU | 1 |
UGAAC*GCGCA | 1 |
CACC*GCAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAU*CGU | 2 |
UGAUUAGCGA*GA | 1 |
GAA*CGC | 1 |
AC*CAA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_09530.2 | Only in the parent motif |
---|---|---|---|
IL_09530.1 Compare | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005 | IL_3BNP_003 | |
IL_05684.1 Compare | IL_3BNP_003 | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005 | IL_2QBG_057, IL_3BNP_002, IL_3V2F_043, IL_3BNQ_005 |
Children motifs
Child motif | Common motif instances | Only in IL_09530.2 | Only in the child motif |
---|---|---|---|
IL_09530.3 Compare | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005 | IL_3BNP_003 | |
IL_55114.2 Compare | IL_3BNP_003 | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005 | IL_4CUX_062, IL_3BNP_002, IL_2QBG_057, IL_4NVV_045, IL_3BNQ_005 |
- Annotations
-
- (3)
- cWH basepair and non-canonical AC (2)
- Basepair signature
- cWW-cWH-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.52 | Max 1.03
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